miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 73370 0.68 0.299588
Target:  5'- gCCUCgCCCCCggugUCCCCCau-CCCGCUGg -3'
miRNA:   3'- -GGGGgGGGGG----GGGGGGaacGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 3477 0.68 0.280946
Target:  5'- gCCCCgCCgCCgagCCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGgGGgGG---GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 104343 0.68 0.281552
Target:  5'- gCCCaUCCCCCgCCUCCCCgcaaccaaccagccGCCCGCa- -3'
miRNA:   3'- -GGG-GGGGGG-GGGGGGGaa------------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 33142 0.68 0.287056
Target:  5'- gCCCCUCCCUCUCUCCC---CCCGCa- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 57516 0.68 0.287056
Target:  5'- uCCCCCaacaCCCCgCCCCCCUcGCgCGg-- -3'
miRNA:   3'- -GGGGGg---GGGG-GGGGGGAaCGgGUgac -5'
21706 5' -68.3 NC_004812.1 + 118969 0.68 0.287056
Target:  5'- aCCCCCCacuaaCUCCCUCUCUUGUUCugUc -3'
miRNA:   3'- -GGGGGGg----GGGGGGGGGAACGGGugAc -5'
21706 5' -68.3 NC_004812.1 + 146954 0.68 0.289529
Target:  5'- gUCCCCCUCCCCgguggcgcugaguuuCCCCCgacgcaCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGG---------------GGGGGaac---GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119013 0.68 0.29327
Target:  5'- uCUCUCCCCCCCaacacacacgCCCCCUgucGUCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGG----------GGGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119376 0.68 0.312539
Target:  5'- gCCCCCUgCUgCCCCUCcUGCCCGg-- -3'
miRNA:   3'- -GGGGGGgGGgGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 95406 0.68 0.280946
Target:  5'- gCCCCCCCgCCCaucguuCCCCCgccaugGCCgGgUGg -3'
miRNA:   3'- -GGGGGGGgGGG------GGGGGaa----CGGgUgAC- -5'
21706 5' -68.3 NC_004812.1 + 153517 0.68 0.27494
Target:  5'- gCgCCUCCCCCgCCCC--GCCCGcCUGg -3'
miRNA:   3'- gGgGGGGGGGGgGGGGaaCGGGU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 78302 0.68 0.27494
Target:  5'- gCCCUCCgCCCCCgCCCCggcgUGCgUGCg- -3'
miRNA:   3'- -GGGGGGgGGGGG-GGGGa---ACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 41083 0.68 0.306011
Target:  5'- gCCCCCCCUCCguaCUCCCC--GCCCGu-- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 20915 0.68 0.31057
Target:  5'- aCCCCCUUCCCCacggcacacaaccaCCCCCUgGCggCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--------------GGGGGAaCGg-GUGAC- -5'
21706 5' -68.3 NC_004812.1 + 150277 0.68 0.312539
Target:  5'- gCCCCCUgCUgCCCCUCcUGCCCGg-- -3'
miRNA:   3'- -GGGGGGgGGgGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 151123 0.68 0.31057
Target:  5'- uCCUCCUCCCgugggugacccucgCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGGGGGGG--------------GGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 150565 0.68 0.30861
Target:  5'- gCCUUCCCCUCgCCgCCCUacggcgcgcagucgcUGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGgGG-GGGA---------------ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 66179 0.68 0.306011
Target:  5'- uUCCCaCCCCgCCgUCCCgcGCCCGCa- -3'
miRNA:   3'- -GGGG-GGGGgGGgGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151227 0.68 0.299588
Target:  5'- aCCCCgaCCCCCCUCCCgCCgcgggagaGCCCGaguCUGc -3'
miRNA:   3'- -GGGG--GGGGGGGGGG-GGaa------CGGGU---GAC- -5'
21706 5' -68.3 NC_004812.1 + 50811 0.68 0.312539
Target:  5'- gCCCCCaCCCCCaagCCCCCCggcgacggGagcuaCCugUGg -3'
miRNA:   3'- -GGGGG-GGGGG---GGGGGGaa------Cg----GGugAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.