Results 81 - 100 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 118227 | 0.74 | 0.111948 |
Target: 5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3' miRNA: 3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 120934 | 0.74 | 0.109285 |
Target: 5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3' miRNA: 3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116036 | 0.74 | 0.109285 |
Target: 5'- uCCCCCgCgCCCCCUCCCCUccCCCGCg- -3' miRNA: 3'- -GGGGG-G-GGGGGGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115898 | 0.74 | 0.109285 |
Target: 5'- uCCCCCgCgCCCCCUCCCCUccCCCGCg- -3' miRNA: 3'- -GGGGG-G-GGGGGGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 95352 | 0.74 | 0.106168 |
Target: 5'- cCCCCCCUCCCCgCCCCCggauucauccucUGCuCCACc- -3' miRNA: 3'- -GGGGGGGGGGG-GGGGGa-----------ACG-GGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6968 | 0.74 | 0.123218 |
Target: 5'- gCCCCCCCUUCCCCCaCCccGCCCcCa- -3' miRNA: 3'- -GGGGGGGGGGGGGG-GGaaCGGGuGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 361 | 0.74 | 0.114672 |
Target: 5'- uCCCCCUCCCgUCCCCCUcccGCcCCGCUc -3' miRNA: 3'- -GGGGGGGGGgGGGGGGAa--CG-GGUGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 149128 | 0.74 | 0.111948 |
Target: 5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3' miRNA: 3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 9898 | 0.74 | 0.114672 |
Target: 5'- cCUUUCCCCCCCCCCCCgaGUCUAUg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 39682 | 0.74 | 0.120306 |
Target: 5'- aCCCCCCCCacuccggccuCCUCCCCCUcccGCCCggGCUa -3' miRNA: 3'- -GGGGGGGG----------GGGGGGGGAa--CGGG--UGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 84836 | 0.73 | 0.128015 |
Target: 5'- aCCCCCgCCCCCCCgCCUgucgcagcgaccgGCCCAa-- -3' miRNA: 3'- -GGGGGgGGGGGGGgGGAa------------CGGGUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 121042 | 0.73 | 0.128015 |
Target: 5'- gCCCCCgCCgCCCCCUCCCUcuauccgggccccGCCCGCg- -3' miRNA: 3'- -GGGGG-GG-GGGGGGGGGAa------------CGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 84434 | 0.73 | 0.125296 |
Target: 5'- gCCCCCggccgcacccagcaCCCUCCCCCCaaGCCCGCc- -3' miRNA: 3'- gGGGGG--------------GGGGGGGGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 118027 | 0.73 | 0.142108 |
Target: 5'- aCCCCCgcgCCCgCCCaCCCCCgcucccgGCCCGCg- -3' miRNA: 3'- -GGGGG---GGG-GGG-GGGGGaa-----CGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 131726 | 0.73 | 0.12924 |
Target: 5'- cCCCCUUCCCUCCCCCCUU-CCCu--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGugac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 134636 | 0.73 | 0.145503 |
Target: 5'- gCCCUgCCCCCCUCCCCgcgcgaGCaCCACg- -3' miRNA: 3'- -GGGGgGGGGGGGGGGGaa----CG-GGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 120008 | 0.73 | 0.130477 |
Target: 5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3' miRNA: 3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116853 | 0.73 | 0.135534 |
Target: 5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3' miRNA: 3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 125457 | 0.73 | 0.137802 |
Target: 5'- aCCCCCCCCUCCUCCCgcgcgggagccuuggGcCCCGCg- -3' miRNA: 3'- gGGGGGGGGGGGGGGGaa-------------C-GGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 132311 | 0.73 | 0.138785 |
Target: 5'- cCCCUUCCCUUCCCCCCUUcCCCGUUGu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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