miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 125457 0.73 0.137802
Target:  5'- aCCCCCCCCUCCUCCCgcgcgggagccuuggGcCCCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-------------C-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 116853 0.73 0.135534
Target:  5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 120008 0.73 0.130477
Target:  5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3'
miRNA:   3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 134636 0.73 0.145503
Target:  5'- gCCCUgCCCCCCUCCCCgcgcgaGCaCCACg- -3'
miRNA:   3'- -GGGGgGGGGGGGGGGGaa----CG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 21484 0.73 0.138785
Target:  5'- uCCUCCCCaaacaCCCCaCCCCagGCCCACc- -3'
miRNA:   3'- -GGGGGGGg----GGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 6803 0.73 0.138785
Target:  5'- cCCCUUCCCUUCCCCCCUUcCCCGUUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 131726 0.73 0.12924
Target:  5'- cCCCCUUCCCUCCCCCCUU-CCCu--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGugac -5'
21706 5' -68.3 NC_004812.1 + 148928 0.73 0.142108
Target:  5'- aCCCCCgcgCCCgCCCaCCCCCgcucccgGCCCGCg- -3'
miRNA:   3'- -GGGGG---GGG-GGG-GGGGGaa-----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 77191 0.73 0.12924
Target:  5'- aCCCCgCCCCCCaaagcggcggCCCCCgaGCCaGCUGg -3'
miRNA:   3'- -GGGGgGGGGGG----------GGGGGaaCGGgUGAC- -5'
21706 5' -68.3 NC_004812.1 + 7755 0.72 0.156137
Target:  5'- gCCCgCCUCCCCCCCCgugcgUGCgCGCc- -3'
miRNA:   3'- gGGGgGGGGGGGGGGGa----ACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 139820 0.72 0.171408
Target:  5'- aCUCCCCCCgCCCCaCCUggGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGgGGGG-GGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 139907 0.72 0.16747
Target:  5'- aCCCCCCCacaCCCCCCUgUUuCCCuucCUGa -3'
miRNA:   3'- -GGGGGGGg--GGGGGGGgAAcGGGu--GAC- -5'
21706 5' -68.3 NC_004812.1 + 133024 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 121085 0.72 0.152517
Target:  5'- uCCCgCCCCCCCgCCCCUaagGgCCACc- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 49858 0.72 0.163613
Target:  5'- cCCCUCCUCCgaCCCCCCCgcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGG--GGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 106984 0.72 0.159836
Target:  5'- gCCUCCCCCUCCCgCCCCgcgggcGCCC-CUc -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGaa----CGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 29639 0.72 0.156137
Target:  5'- uCCUCCCCCUCCCCauCCCUUcucucccccGCCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGGGG--GGGAA---------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 120111 0.72 0.155772
Target:  5'- cCCCCugggggaCCCCgCCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGG-------GGGG-GGGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 24335 0.72 0.148972
Target:  5'- aCCCCCCCCCCaCCaccacacaCCCUcGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGG-GGg-------GGGAaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 97614 0.72 0.148972
Target:  5'- cCCCUUCCCCCUCCCCCgguaacccGaCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa------C-GGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.