miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 139907 0.72 0.16747
Target:  5'- aCCCCCCCacaCCCCCCUgUUuCCCuucCUGa -3'
miRNA:   3'- -GGGGGGGg--GGGGGGGgAAcGGGu--GAC- -5'
21706 5' -68.3 NC_004812.1 + 139820 0.72 0.171408
Target:  5'- aCUCCCCCCgCCCCaCCUggGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGgGGGG-GGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 150608 0.72 0.159836
Target:  5'- cCCCCUUCCCCucgCCCCCCggcGCCUACc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 104690 0.72 0.159836
Target:  5'- cCUCCCCCCUCaCCCUCCUUccaCUCACUGc -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAAc--GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 40343 0.72 0.163613
Target:  5'- uCCCCCCCCgCCCCUaCCCccGCCCcccuuuuCUGu -3'
miRNA:   3'- -GGGGGGGG-GGGGG-GGGaaCGGGu------GAC- -5'
21706 5' -68.3 NC_004812.1 + 38656 0.72 0.156137
Target:  5'- gCCCgCCUCCCCCCCCgugcgUGCgCGCc- -3'
miRNA:   3'- gGGGgGGGGGGGGGGGa----ACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 151012 0.72 0.155772
Target:  5'- cCCCCugggggaCCCCgCCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGG-------GGGG-GGGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 151986 0.72 0.152517
Target:  5'- uCCCgCCCCCCCgCCCCUaagGgCCACc- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 84574 0.72 0.152517
Target:  5'- aCCCCCCgCCCCCCCagaCCgucccgGCCCcCg- -3'
miRNA:   3'- -GGGGGG-GGGGGGGg--GGaa----CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 125801 0.72 0.152517
Target:  5'- gCCCUgCCCCCCCguggggCCCUcgGCCCGCg- -3'
miRNA:   3'- gGGGGgGGGGGGG------GGGAa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 84314 0.72 0.159836
Target:  5'- aUCCgUCCCCCCgCCCCg-GCCCGCa- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 7516 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 29639 0.72 0.156137
Target:  5'- uCCUCCCCCUCCCCauCCCUUcucucccccGCCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGGGG--GGGAA---------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 54342 0.72 0.148972
Target:  5'- aCCCauCCCUCCCCCCUCCUcGCCgACc- -3'
miRNA:   3'- -GGG--GGGGGGGGGGGGGAaCGGgUGac -5'
21706 5' -68.3 NC_004812.1 + 149999 0.72 0.166304
Target:  5'- uCCCCCCCaccccacccacccaCCCCCgCCUCUguuucGCCCGCa- -3'
miRNA:   3'- -GGGGGGG--------------GGGGG-GGGGAa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 132225 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 3445 0.71 0.201357
Target:  5'- gCCCCCCgugguCCCCguggCCCCCC--GCCCGCg- -3'
miRNA:   3'- -GGGGGG-----GGGG----GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 132199 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 126006 0.71 0.179534
Target:  5'- aCCCCUUCUCCCggCCCCCggucCCCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--GGGGGaac-GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 80390 0.71 0.196815
Target:  5'- gCCCgCCCCCCCUUCCgcgcggucUGCCCAUc- -3'
miRNA:   3'- gGGGgGGGGGGGGGGGa-------ACGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.