Results 21 - 40 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 116064 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116006 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115868 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 125933 | 0.8 | 0.040804 |
Target: 5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 425 | 0.8 | 0.040804 |
Target: 5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 119187 | 0.8 | 0.042896 |
Target: 5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3' miRNA: 3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150088 | 0.8 | 0.042896 |
Target: 5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3' miRNA: 3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 894 | 0.8 | 0.045093 |
Target: 5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3' miRNA: 3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 126402 | 0.8 | 0.045093 |
Target: 5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3' miRNA: 3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 138678 | 0.8 | 0.045093 |
Target: 5'- aCCCCCUCUCCCCCCCCgaccggGCCuCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaa----CGG-GUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 29603 | 0.79 | 0.0474 |
Target: 5'- gCUCCCCCCCCCCCgCCCUacCCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGG-GGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 101896 | 0.79 | 0.048596 |
Target: 5'- cCCCCUCCCCUCCCCCCUcGUCCcccucCUGg -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAaCGGGu----GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150527 | 0.79 | 0.049821 |
Target: 5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 25018 | 0.79 | 0.049821 |
Target: 5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115926 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115966 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 1548 | 0.78 | 0.056413 |
Target: 5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 146520 | 0.78 | 0.056413 |
Target: 5'- aCCCCCacagcgaCCCCCaCCCCCguguugUGCCCACa- -3' miRNA: 3'- -GGGGGg------GGGGG-GGGGGa-----ACGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 127056 | 0.78 | 0.056413 |
Target: 5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 119564 | 0.78 | 0.05783 |
Target: 5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3' miRNA: 3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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