miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 150465 0.78 0.05783
Target:  5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3'
miRNA:   3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 7207 0.78 0.059281
Target:  5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 38108 0.78 0.059281
Target:  5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 118192 0.78 0.060767
Target:  5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149093 0.78 0.060767
Target:  5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 1836 0.78 0.060918
Target:  5'- uCCCCCCUCCUCCCCUCUccccgcgcagccccgGCCCGCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa--------------CGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 127344 0.78 0.060918
Target:  5'- uCCCCCCUCCUCCCCUCUccccgcgcagccccgGCCCGCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa--------------CGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 125764 0.77 0.068754
Target:  5'- uCCCCCCCCCCCCCCCC---CCCn--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 256 0.77 0.068754
Target:  5'- uCCCCCCCCCCCCCCCC---CCCn--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 34056 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 3155 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 122607 0.77 0.075863
Target:  5'- aCUCCCUCCCCCUCCCCUccccCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 153508 0.77 0.075863
Target:  5'- aCUCCCUCCCCCUCCCCUccccCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 85732 0.76 0.079677
Target:  5'- cCCCUCCCCgCCCCCCCCgcGCagCCACg- -3'
miRNA:   3'- -GGGGGGGG-GGGGGGGGaaCG--GGUGac -5'
21706 5' -68.3 NC_004812.1 + 128805 0.76 0.079677
Target:  5'- aCCCCCgCUCCCCCCCCggcCCCGCc- -3'
miRNA:   3'- -GGGGGgGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 8101 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 40276 0.76 0.083673
Target:  5'- cCCCCCucccuacaCCCCCCCCCCCaUGCUCGa-- -3'
miRNA:   3'- -GGGGG--------GGGGGGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 39002 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 56776 0.75 0.090028
Target:  5'- cCCCCUCCUCCCCCCCCUc-CCCGa-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 136719 0.75 0.092247
Target:  5'- gCCCCCagaCCCacgaCCCCCCCCgcGCCCACg- -3'
miRNA:   3'- -GGGGG---GGG----GGGGGGGGaaCGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.