miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 128891 0.75 0.092247
Target:  5'- gCCCCCCgCCCCCCCUCguccguccUGUCC-CUGg -3'
miRNA:   3'- -GGGGGGgGGGGGGGGGa-------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 69541 0.75 0.094517
Target:  5'- gCCgCCCCCCCgCgCCCC-UGCCCGCg- -3'
miRNA:   3'- -GGgGGGGGGGgG-GGGGaACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 145890 0.75 0.094517
Target:  5'- gCCCCgCCgCCCCUCCCCCUggaGCCCG-UGg -3'
miRNA:   3'- -GGGG-GG-GGGGGGGGGGAa--CGGGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 120378 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 120438 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 149676 0.75 0.09684
Target:  5'- uCCCCgcuUCCCCCCCaCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGG---GGGGGGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151279 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 151339 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 55744 0.75 0.099217
Target:  5'- cCCUCCCCCgCCUCCCCCgcgGCCC-Cg- -3'
miRNA:   3'- -GGGGGGGG-GGGGGGGGaa-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 65414 0.75 0.099217
Target:  5'- gCCgCgCCCCCCgCCCCCgaGCCCGCg- -3'
miRNA:   3'- -GGgGgGGGGGG-GGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 154561 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 29052 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 126243 0.75 0.104136
Target:  5'- gCCCCUCCCCUCCCCCgccGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 735 0.75 0.104136
Target:  5'- gCCCCUCCCCUCCCCCgccGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 95352 0.74 0.106168
Target:  5'- cCCCCCCUCCCCgCCCCCggauucauccucUGCuCCACc- -3'
miRNA:   3'- -GGGGGGGGGGG-GGGGGa-----------ACG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 151835 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 115898 0.74 0.109285
Target:  5'- uCCCCCgCgCCCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- -GGGGG-G-GGGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 120934 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 116036 0.74 0.109285
Target:  5'- uCCCCCgCgCCCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- -GGGGG-G-GGGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 118227 0.74 0.111948
Target:  5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.