miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 118227 0.74 0.111948
Target:  5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5'
21706 5' -68.3 NC_004812.1 + 9898 0.74 0.114672
Target:  5'- cCUUUCCCCCCCCCCCCgaGUCUAUg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 125869 0.74 0.114672
Target:  5'- uCCCCCUCCCgUCCCCCUcccGCcCCGCUc -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa--CG-GGUGAc -5'
21706 5' -68.3 NC_004812.1 + 119750 0.74 0.114672
Target:  5'- gCCCCCCCgCgCCUCCCCgggcccUGCCCcCUGu -3'
miRNA:   3'- -GGGGGGGgG-GGGGGGGa-----ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 361 0.74 0.114672
Target:  5'- uCCCCCUCCCgUCCCCCUcccGCcCCGCUc -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa--CG-GGUGAc -5'
21706 5' -68.3 NC_004812.1 + 145258 0.74 0.117457
Target:  5'- aCCgCCCCCCUCCCgUCgaGCCCACa- -3'
miRNA:   3'- -GGgGGGGGGGGGGgGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 8781 0.74 0.120306
Target:  5'- aCCCCCCCCacuccggccuCCUCCCCCUcccGCCCggGCUa -3'
miRNA:   3'- -GGGGGGGG----------GGGGGGGGAa--CGGG--UGAc -5'
21706 5' -68.3 NC_004812.1 + 132477 0.74 0.120306
Target:  5'- cCCCCCCUUCCCCCaCCCccGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGGGGG-GGGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 39682 0.74 0.120306
Target:  5'- aCCCCCCCCacuccggccuCCUCCCCCUcccGCCCggGCUa -3'
miRNA:   3'- -GGGGGGGG----------GGGGGGGGAa--CGGG--UGAc -5'
21706 5' -68.3 NC_004812.1 + 6968 0.74 0.123218
Target:  5'- gCCCCCCCUUCCCCCaCCccGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGGGGGG-GGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 84434 0.73 0.125296
Target:  5'- gCCCCCggccgcacccagcaCCCUCCCCCCaaGCCCGCc- -3'
miRNA:   3'- gGGGGG--------------GGGGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 121042 0.73 0.128015
Target:  5'- gCCCCCgCCgCCCCCUCCCUcuauccgggccccGCCCGCg- -3'
miRNA:   3'- -GGGGG-GG-GGGGGGGGGAa------------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 84836 0.73 0.128015
Target:  5'- aCCCCCgCCCCCCCgCCUgucgcagcgaccgGCCCAa-- -3'
miRNA:   3'- -GGGGGgGGGGGGGgGGAa------------CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 77191 0.73 0.12924
Target:  5'- aCCCCgCCCCCCaaagcggcggCCCCCgaGCCaGCUGg -3'
miRNA:   3'- -GGGGgGGGGGG----------GGGGGaaCGGgUGAC- -5'
21706 5' -68.3 NC_004812.1 + 131726 0.73 0.12924
Target:  5'- cCCCCUUCCCUCCCCCCUU-CCCu--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGugac -5'
21706 5' -68.3 NC_004812.1 + 120008 0.73 0.130477
Target:  5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3'
miRNA:   3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 150909 0.73 0.130477
Target:  5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3'
miRNA:   3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 108772 0.73 0.132353
Target:  5'- cCCCUCUCCCCUCCCCCaccGCCCuuGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGG--UGac -5'
21706 5' -68.3 NC_004812.1 + 147754 0.73 0.135534
Target:  5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 116853 0.73 0.135534
Target:  5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.