miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 29639 0.72 0.156137
Target:  5'- uCCUCCCCCUCCCCauCCCUUcucucccccGCCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGGGG--GGGAA---------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 123783 0.72 0.156137
Target:  5'- gCCgCCCCCCgCCCCCaCUcGUCCGCg- -3'
miRNA:   3'- -GGgGGGGGGgGGGGG-GAaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 106984 0.72 0.159836
Target:  5'- gCCUCCCCCUCCCgCCCCgcgggcGCCC-CUc -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGaa----CGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 84314 0.72 0.159836
Target:  5'- aUCCgUCCCCCCgCCCCg-GCCCGCa- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150608 0.72 0.159836
Target:  5'- cCCCCUUCCCCucgCCCCCCggcGCCUACc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 104690 0.72 0.159836
Target:  5'- cCUCCCCCCUCaCCCUCCUUccaCUCACUGc -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAAc--GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 119707 0.72 0.159836
Target:  5'- cCCCCUUCCCCucgCCCCCCggcGCCUACc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 49858 0.72 0.163613
Target:  5'- cCCCUCCUCCgaCCCCCCCgcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGG--GGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 133024 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 40343 0.72 0.163613
Target:  5'- uCCCCCCCCgCCCCUaCCCccGCCCcccuuuuCUGu -3'
miRNA:   3'- -GGGGGGGG-GGGGG-GGGaaCGGGu------GAC- -5'
21706 5' -68.3 NC_004812.1 + 7516 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 149999 0.72 0.166304
Target:  5'- uCCCCCCCaccccacccacccaCCCCCgCCUCUguuucGCCCGCa- -3'
miRNA:   3'- -GGGGGGG--------------GGGGG-GGGGAa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119098 0.72 0.166304
Target:  5'- uCCCCCCCaccccacccacccaCCCCCgCCUCUguuucGCCCGCa- -3'
miRNA:   3'- -GGGGGGG--------------GGGGG-GGGGAa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 139907 0.72 0.16747
Target:  5'- aCCCCCCCacaCCCCCCUgUUuCCCuucCUGa -3'
miRNA:   3'- -GGGGGGGg--GGGGGGGgAAcGGGu--GAC- -5'
21706 5' -68.3 NC_004812.1 + 139820 0.72 0.171408
Target:  5'- aCUCCCCCCgCCCCaCCUggGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGgGGGG-GGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 498 0.71 0.179534
Target:  5'- aCCCCUUCUCCCggCCCCCggucCCCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--GGGGGaac-GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 5765 0.71 0.179534
Target:  5'- gCCCCUCUCCUCUCCCCguccGCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 126006 0.71 0.179534
Target:  5'- aCCCCUUCUCCCggCCCCCggucCCCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--GGGGGaac-GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 118774 0.71 0.179534
Target:  5'- uCCCCgcuUCCCCCCCaCCCCggcCCCGCg- -3'
miRNA:   3'- -GGGG---GGGGGGGG-GGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 131273 0.71 0.179534
Target:  5'- gCCCCUCUCCUCUCCCCguccGCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa--CGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.