miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 120645 0.66 0.375251
Target:  5'- gCCCCCCgagUCUCCCgCCCggGCCCccgugaccgcggcGCUGc -3'
miRNA:   3'- -GGGGGG---GGGGGGgGGGaaCGGG-------------UGAC- -5'
21706 5' -68.3 NC_004812.1 + 151546 0.66 0.375251
Target:  5'- gCCCCCCgagUCUCCCgCCCggGCCCccgugaccgcggcGCUGc -3'
miRNA:   3'- -GGGGGG---GGGGGGgGGGaaCGGG-------------UGAC- -5'
21706 5' -68.3 NC_004812.1 + 146139 0.66 0.375251
Target:  5'- uCCCCCCCgcggUCCCCacccggcauggaaCCCCUgcgGCUCGCc- -3'
miRNA:   3'- -GGGGGGG----GGGGG-------------GGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 66856 0.66 0.368536
Target:  5'- aCCCgCCCCCCaaCUCgUUGCCgCACg- -3'
miRNA:   3'- -GGGgGGGGGGggGGGgAACGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 121585 0.66 0.368536
Target:  5'- aCCCCgaCCCCCgggCCCCCgCCgaGCUCGCc- -3'
miRNA:   3'- -GGGG--GGGGG---GGGGG-GGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 78882 0.66 0.368536
Target:  5'- gCCCCCaCCCCCUgagCCCCgagGCCauccggguucgGCUGg -3'
miRNA:   3'- gGGGGG-GGGGGG---GGGGaa-CGGg----------UGAC- -5'
21706 5' -68.3 NC_004812.1 + 140690 0.66 0.368536
Target:  5'- aCCCCgCgaCCCCaCCCCC--GCCCGCc- -3'
miRNA:   3'- -GGGGgGg-GGGG-GGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 143146 0.67 0.361173
Target:  5'- gUCCCCgcgacgccaCCCCCCaCCCCCgaGaCCACg- -3'
miRNA:   3'- -GGGGG---------GGGGGG-GGGGGaaCgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119831 0.67 0.361173
Target:  5'- gCCCgCgCCCgCgCCCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGgGgGGG-G-GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 126100 0.67 0.361173
Target:  5'- gCCCCCggccccgggcgUCCCCUCCCCC--GCgCCGCg- -3'
miRNA:   3'- -GGGGG-----------GGGGGGGGGGGaaCG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 113558 0.67 0.361173
Target:  5'- cCCCCgcaCCCCCaCCgCCCCCgcaccCCCACc- -3'
miRNA:   3'- -GGGG---GGGGG-GG-GGGGGaac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150732 0.67 0.361173
Target:  5'- gCCCgCgCCCgCgCCCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGgGgGGG-G-GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 592 0.67 0.361173
Target:  5'- gCCCCCggccccgggcgUCCCCUCCCCC--GCgCCGCg- -3'
miRNA:   3'- -GGGGG-----------GGGGGGGGGGGaaCG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 22694 0.67 0.361173
Target:  5'- aCCCCgcgUCCCCCCCgCCCgggGUuaCCACg- -3'
miRNA:   3'- -GGGG---GGGGGGGGgGGGaa-CG--GGUGac -5'
21706 5' -68.3 NC_004812.1 + 11955 0.67 0.361173
Target:  5'- uCCUCCgUCCCgCCCUCCUcgUGuCCCGCg- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGA--AC-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 136956 0.67 0.361173
Target:  5'- gCCacggaCCCCCUCgCCCUggcgGCCCACg- -3'
miRNA:   3'- gGGg----GGGGGGGgGGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 9804 0.67 0.353912
Target:  5'- uCCCUcggUCCCUCCCCCCCU--UCgACUGu -3'
miRNA:   3'- -GGGG---GGGGGGGGGGGGAacGGgUGAC- -5'
21706 5' -68.3 NC_004812.1 + 16965 0.67 0.353912
Target:  5'- uCUCCCCUgCCCCUCUCUcgGCCC-Cg- -3'
miRNA:   3'- -GGGGGGGgGGGGGGGGAa-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 139856 0.67 0.353192
Target:  5'- gCCCCCgCgCCCCCCgacugagCCCCagGCCCcCUc -3'
miRNA:   3'- -GGGGG-G-GGGGGG-------GGGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 43361 0.67 0.346755
Target:  5'- aCgUCCaCCCCCCCCgCgagcgGCCCACc- -3'
miRNA:   3'- gGgGGG-GGGGGGGGgGaa---CGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.