Results 61 - 80 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 149972 | 0.67 | 0.346755 |
Target: 5'- cUCCCCCaCCCCCUCCCCU--CUCuCUu -3' miRNA: 3'- -GGGGGG-GGGGGGGGGGAacGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 80672 | 0.67 | 0.346755 |
Target: 5'- uCCCCUCCUCCCgcaCCUCCagGUCC-CUGg -3' miRNA: 3'- -GGGGGGGGGGG---GGGGGaaCGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 119071 | 0.67 | 0.346755 |
Target: 5'- cUCCCCCaCCCCCUCCCCU--CUCuCUu -3' miRNA: 3'- -GGGGGG-GGGGGGGGGGAacGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 545 | 0.67 | 0.346755 |
Target: 5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3' miRNA: 3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 43361 | 0.67 | 0.346755 |
Target: 5'- aCgUCCaCCCCCCCCgCgagcgGCCCACc- -3' miRNA: 3'- gGgGGG-GGGGGGGGgGaa---CGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 31446 | 0.67 | 0.346755 |
Target: 5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3' miRNA: 3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 130387 | 0.67 | 0.346755 |
Target: 5'- gCCCCUcgagUCCCgCCUCCCagaGCCUGCUGg -3' miRNA: 3'- -GGGGG----GGGGgGGGGGGaa-CGGGUGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 76234 | 0.67 | 0.343921 |
Target: 5'- gCCCCCgaaCUCCCCCUCgcaggcggccagGCCCGCg- -3' miRNA: 3'- gGGGGGg--GGGGGGGGGaa----------CGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 89299 | 0.67 | 0.339702 |
Target: 5'- gCCCgCgCUCgCCUCCCCgaGCCCGCUc -3' miRNA: 3'- -GGGgGgGGG-GGGGGGGaaCGGGUGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 72761 | 0.67 | 0.339702 |
Target: 5'- gCCCCCCgCCgCUCCCCCCggagacgGCCgGg-- -3' miRNA: 3'- -GGGGGG-GG-GGGGGGGGaa-----CGGgUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 58517 | 0.67 | 0.339702 |
Target: 5'- gCCCCUguuCUCCCCgCCCCCgauaGCCCGg-- -3' miRNA: 3'- -GGGGG---GGGGGG-GGGGGaa--CGGGUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 52647 | 0.67 | 0.332754 |
Target: 5'- gCCCCCCguUCCggUCCCCCCggcgGCCCuCUa -3' miRNA: 3'- -GGGGGG--GGG--GGGGGGGaa--CGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 2421 | 0.67 | 0.325911 |
Target: 5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3' miRNA: 3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 125506 | 0.67 | 0.325911 |
Target: 5'- gCCCCCCCUCCCCgcguuUCCgggGCgCGCg- -3' miRNA: 3'- gGGGGGGGGGGGG-----GGGaa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 2967 | 0.67 | 0.325911 |
Target: 5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3' miRNA: 3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 33322 | 0.67 | 0.325911 |
Target: 5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3' miRNA: 3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 49304 | 0.67 | 0.325911 |
Target: 5'- gCCCCCCCggaacgCCCCaaggCCCC--GCCCACc- -3' miRNA: 3'- -GGGGGGG------GGGGg---GGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 156407 | 0.67 | 0.325911 |
Target: 5'- gCCCCCCCUCCCCgcguuUCCgggGCgCGCg- -3' miRNA: 3'- gGGGGGGGGGGGG-----GGGaa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 33868 | 0.67 | 0.325911 |
Target: 5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3' miRNA: 3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 165 | 0.67 | 0.325232 |
Target: 5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3' miRNA: 3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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