miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 165 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 156575 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 151609 0.67 0.319172
Target:  5'- gCCgCCCCCgCCCgCCCUgcgGCgCACg- -3'
miRNA:   3'- -GGgGGGGGgGGGgGGGAa--CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 7972 0.67 0.319172
Target:  5'- aCCCCUCgCCCUCCCUCC---CCCGCg- -3'
miRNA:   3'- -GGGGGG-GGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 84122 0.67 0.319172
Target:  5'- gCCCCCCgaCCCCgaggcgccgccgCCCCCCU--CCCACc- -3'
miRNA:   3'- -GGGGGG--GGGG------------GGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 120708 0.67 0.319172
Target:  5'- gCCgCCCCCgCCCgCCCUgcgGCgCACg- -3'
miRNA:   3'- -GGgGGGGGgGGGgGGGAa--CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 32264 0.67 0.319172
Target:  5'- gUCCUCCCgguccgcggcgUCCCCCCCCgggGCCgugaGCUGc -3'
miRNA:   3'- -GGGGGGG-----------GGGGGGGGGaa-CGGg---UGAC- -5'
21706 5' -68.3 NC_004812.1 + 120159 0.67 0.317837
Target:  5'- gUCCUCCUCCgCCCCUCUggggggcccccgGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151060 0.67 0.317837
Target:  5'- gUCCUCCUCCgCCCCUCUggggggcccccgGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 50811 0.68 0.312539
Target:  5'- gCCCCCaCCCCCaagCCCCCCggcgacggGagcuaCCugUGg -3'
miRNA:   3'- -GGGGG-GGGGG---GGGGGGaa------Cg----GGugAC- -5'
21706 5' -68.3 NC_004812.1 + 119376 0.68 0.312539
Target:  5'- gCCCCCUgCUgCCCCUCcUGCCCGg-- -3'
miRNA:   3'- -GGGGGGgGGgGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 150277 0.68 0.312539
Target:  5'- gCCCCCUgCUgCCCCUCcUGCCCGg-- -3'
miRNA:   3'- -GGGGGGgGGgGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 120222 0.68 0.31057
Target:  5'- uCCUCCUCCCgugggugacccucgCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGGGGGGG--------------GGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 20915 0.68 0.31057
Target:  5'- aCCCCCUUCCCCacggcacacaaccaCCCCCUgGCggCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--------------GGGGGAaCGg-GUGAC- -5'
21706 5' -68.3 NC_004812.1 + 151123 0.68 0.31057
Target:  5'- uCCUCCUCCCgugggugacccucgCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGGGGGGG--------------GGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 150565 0.68 0.30861
Target:  5'- gCCUUCCCCUCgCCgCCCUacggcgcgcagucgcUGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGgGG-GGGA---------------ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119664 0.68 0.30861
Target:  5'- gCCUUCCCCUCgCCgCCCUacggcgcgcagucgcUGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGgGG-GGGA---------------ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 41270 0.68 0.306011
Target:  5'- gCCCgCCCCCgCUgCCCCaacgccGCCCACg- -3'
miRNA:   3'- -GGGgGGGGG-GGgGGGGaa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 41083 0.68 0.306011
Target:  5'- gCCCCCCCUCCguaCUCCCC--GCCCGu-- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 66179 0.68 0.306011
Target:  5'- uUCCCaCCCCgCCgUCCCgcGCCCGCa- -3'
miRNA:   3'- -GGGG-GGGGgGGgGGGGaaCGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.