miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 66179 0.68 0.306011
Target:  5'- uUCCCaCCCCgCCgUCCCgcGCCCGCa- -3'
miRNA:   3'- -GGGG-GGGGgGGgGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 50033 0.68 0.302145
Target:  5'- cCCCCCCgcgggCCCCCUggcgauuaacguggaCCaCCgcGCCCGCUGc -3'
miRNA:   3'- -GGGGGG-----GGGGGG---------------GG-GGaaCGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 73370 0.68 0.299588
Target:  5'- gCCUCgCCCCCggugUCCCCCau-CCCGCUGg -3'
miRNA:   3'- -GGGGgGGGGG----GGGGGGaacGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 151227 0.68 0.299588
Target:  5'- aCCCCgaCCCCCCUCCCgCCgcgggagaGCCCGaguCUGc -3'
miRNA:   3'- -GGGG--GGGGGGGGGG-GGaa------CGGGU---GAC- -5'
21706 5' -68.3 NC_004812.1 + 142145 0.68 0.299588
Target:  5'- gCCCCgCCCCCgCgCCCUccgGCCaCACg- -3'
miRNA:   3'- -GGGGgGGGGGgGgGGGAa--CGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 120326 0.68 0.299588
Target:  5'- aCCCCgaCCCCCCUCCCgCCgcgggagaGCCCGaguCUGc -3'
miRNA:   3'- -GGGG--GGGGGGGGGG-GGaa------CGGGU---GAC- -5'
21706 5' -68.3 NC_004812.1 + 131181 0.68 0.299588
Target:  5'- aCCCCgCCCCCgggaCCCCCCUgcgGuUCUACg- -3'
miRNA:   3'- -GGGG-GGGGGg---GGGGGGAa--C-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 119013 0.68 0.29327
Target:  5'- uCUCUCCCCCCCaacacacacgCCCCCUgucGUCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGG----------GGGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 125847 0.68 0.29327
Target:  5'- uCCCCCUCCCgUCCCCCU--CCCg--- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 149914 0.68 0.29327
Target:  5'- uCUCUCCCCCCCaacacacacgCCCCCUgucGUCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGG----------GGGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 339 0.68 0.29327
Target:  5'- uCCCCCUCCCgUCCCCCU--CCCg--- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 146954 0.68 0.289529
Target:  5'- gUCCCCCUCCCCgguggcgcugaguuuCCCCCgacgcaCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGG---------------GGGGGaac---GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 9969 0.68 0.287056
Target:  5'- cCCUCCCCaCCCCacaaCCCCCagcuccaucCCCGCUGu -3'
miRNA:   3'- -GGGGGGG-GGGG----GGGGGaac------GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 46507 0.68 0.287056
Target:  5'- uUCUCCCgCgCCCCCCggggggGCCCACg- -3'
miRNA:   3'- gGGGGGGgGgGGGGGGaa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 33142 0.68 0.287056
Target:  5'- gCCCCUCCCUCUCUCCC---CCCGCa- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149870 0.68 0.287056
Target:  5'- aCCCCCCacuaaCUCCCUCUCUUGUUCugUc -3'
miRNA:   3'- -GGGGGGg----GGGGGGGGGAACGGGugAc -5'
21706 5' -68.3 NC_004812.1 + 118969 0.68 0.287056
Target:  5'- aCCCCCCacuaaCUCCCUCUCUUGUUCugUc -3'
miRNA:   3'- -GGGGGGg----GGGGGGGGGAACGGGugAc -5'
21706 5' -68.3 NC_004812.1 + 57516 0.68 0.287056
Target:  5'- uCCCCCaacaCCCCgCCCCCCUcGCgCGg-- -3'
miRNA:   3'- -GGGGGg---GGGG-GGGGGGAaCGgGUgac -5'
21706 5' -68.3 NC_004812.1 + 104343 0.68 0.281552
Target:  5'- gCCCaUCCCCCgCCUCCCCgcaaccaaccagccGCCCGCa- -3'
miRNA:   3'- -GGG-GGGGGG-GGGGGGGaa------------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 83038 0.68 0.280946
Target:  5'- aCCCCCCaCCCCagCCCggagGUCCGCg- -3'
miRNA:   3'- gGGGGGG-GGGGggGGGaa--CGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.