miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 2421 0.67 0.325911
Target:  5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3'
miRNA:   3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 2967 0.67 0.325911
Target:  5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3'
miRNA:   3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 3155 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 3406 0.68 0.27494
Target:  5'- gCCgCCCgCCUCCCCCCggcgGCCCu--- -3'
miRNA:   3'- -GGgGGGgGGGGGGGGGaa--CGGGugac -5'
21706 5' -68.3 NC_004812.1 + 3445 0.71 0.201357
Target:  5'- gCCCCCCgugguCCCCguggCCCCCC--GCCCGCg- -3'
miRNA:   3'- -GGGGGG-----GGGG----GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 3477 0.68 0.280946
Target:  5'- gCCCCgCCgCCgagCCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGgGGgGG---GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 3830 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 3949 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 5765 0.71 0.179534
Target:  5'- gCCCCUCUCCUCUCCCCguccGCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 6160 0.66 0.40687
Target:  5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3'
miRNA:   3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 6210 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6236 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6262 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6288 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6314 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6340 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6366 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6392 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6418 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6444 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.