Results 41 - 60 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 6470 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6496 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6522 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6548 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6574 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6600 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6626 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6652 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6678 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6704 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6730 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6756 | 0.71 | 0.196815 |
Target: 5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6803 | 0.73 | 0.138785 |
Target: 5'- cCCCUUCCCUUCCCCCCUUcCCCGUUGu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6936 | 0.7 | 0.220442 |
Target: 5'- uCCCCUCCCCCCacaaCCCC--GCCC-Cg- -3' miRNA: 3'- -GGGGGGGGGGGg---GGGGaaCGGGuGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 6968 | 0.74 | 0.123218 |
Target: 5'- gCCCCCCCUUCCCCCaCCccGCCCcCa- -3' miRNA: 3'- -GGGGGGGGGGGGGG-GGaaCGGGuGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7146 | 0.82 | 0.031754 |
Target: 5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3' miRNA: 3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7207 | 0.78 | 0.059281 |
Target: 5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7516 | 0.72 | 0.163613 |
Target: 5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3' miRNA: 3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7755 | 0.72 | 0.156137 |
Target: 5'- gCCCgCCUCCCCCCCCgugcgUGCgCGCc- -3' miRNA: 3'- gGGGgGGGGGGGGGGGa----ACGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7790 | 0.71 | 0.183724 |
Target: 5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3' miRNA: 3'- gGGGGGGgGGGGGGGGAacGGGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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