miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 10850 0.66 0.379017
Target:  5'- aCCCCCCCgCgcgacgaccgacgagCCCCCCga-CCCGCg- -3'
miRNA:   3'- gGGGGGGGgG---------------GGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 11955 0.67 0.361173
Target:  5'- uCCUCCgUCCCgCCCUCCUcgUGuCCCGCg- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGA--AC-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 12668 0.7 0.230551
Target:  5'- uCCUCCCaCCCCgCCCCCaccuCCCACg- -3'
miRNA:   3'- -GGGGGG-GGGGgGGGGGaac-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 12730 0.69 0.269037
Target:  5'- uCCCCaCCgCCCCaCCCCCaccCCCGCg- -3'
miRNA:   3'- -GGGG-GGgGGGG-GGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 15735 0.66 0.391238
Target:  5'- uCCCgCCaCCCaCCCCCgCgCCUUGCgCGCc- -3'
miRNA:   3'- -GGG-GG-GGG-GGGGG-G-GGAACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 15821 0.69 0.257539
Target:  5'- aUCCCCUCCCCCgaccacaucgcaCCCCCaccCCCACa- -3'
miRNA:   3'- -GGGGGGGGGGG------------GGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 16965 0.67 0.353912
Target:  5'- uCUCCCCUgCCCCUCUCUcgGCCC-Cg- -3'
miRNA:   3'- -GGGGGGGgGGGGGGGGAa-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 18629 0.88 0.010701
Target:  5'- cCCCCCCCCCCCCCCCCgacCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 19724 0.66 0.414832
Target:  5'- aCCCgUCgCCCCCCUCCUcGUCCGg-- -3'
miRNA:   3'- -GGGgGGgGGGGGGGGGAaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 20915 0.68 0.31057
Target:  5'- aCCCCCUUCCCCacggcacacaaccaCCCCCUgGCggCGCUGu -3'
miRNA:   3'- -GGGGGGGGGGG--------------GGGGGAaCGg-GUGAC- -5'
21706 5' -68.3 NC_004812.1 + 21484 0.73 0.138785
Target:  5'- uCCUCCCCaaacaCCCCaCCCCagGCCCACc- -3'
miRNA:   3'- -GGGGGGGg----GGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 21937 0.66 0.391238
Target:  5'- gCUCCgCCCCCCUCCUCgcgagcGCCUcCUGc -3'
miRNA:   3'- -GGGGgGGGGGGGGGGGaa----CGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 22638 0.66 0.38357
Target:  5'- gCCCCCCgCCaCCCgggggCUCCCgcgUGCCCGg-- -3'
miRNA:   3'- -GGGGGG-GG-GGG-----GGGGGa--ACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 22694 0.67 0.361173
Target:  5'- aCCCCgcgUCCCCCCCgCCCgggGUuaCCACg- -3'
miRNA:   3'- -GGGG---GGGGGGGGgGGGaa-CG--GGUGac -5'
21706 5' -68.3 NC_004812.1 + 24335 0.72 0.148972
Target:  5'- aCCCCCCCCCCaCCaccacacaCCCUcGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGG-GGg-------GGGAaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 24972 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 25018 0.79 0.049821
Target:  5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 27585 0.69 0.269037
Target:  5'- -gCCCCgCCCCCggggccgccggCCCCggGCCCGCg- -3'
miRNA:   3'- ggGGGGgGGGGG-----------GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 27716 0.69 0.246446
Target:  5'- gCCCUCCgCCgCCgCCCUCgagGCCUACUGc -3'
miRNA:   3'- -GGGGGGgGG-GG-GGGGGaa-CGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 28008 0.68 0.27494
Target:  5'- gCgCCUCCCCCgCCCC--GCCCGcCUGg -3'
miRNA:   3'- gGgGGGGGGGGgGGGGaaCGGGU-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.