miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 29052 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 29134 0.8 0.039796
Target:  5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 29603 0.79 0.0474
Target:  5'- gCUCCCCCCCCCCCgCCCUacCCCACc- -3'
miRNA:   3'- -GGGGGGGGGGGGG-GGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 29639 0.72 0.156137
Target:  5'- uCCUCCCCCUCCCCauCCCUUcucucccccGCCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGGGG--GGGAA---------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 31066 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 31446 0.67 0.346755
Target:  5'- gCCCUCCCgCCUCCCgCCCcgGCgCGCg- -3'
miRNA:   3'- -GGGGGGG-GGGGGG-GGGaaCGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 32264 0.67 0.319172
Target:  5'- gUCCUCCCgguccgcggcgUCCCCCCCCgggGCCgugaGCUGc -3'
miRNA:   3'- -GGGGGGG-----------GGGGGGGGGaa-CGGg---UGAC- -5'
21706 5' -68.3 NC_004812.1 + 33078 0.69 0.269037
Target:  5'- gCCCCgCCCUCUCCUCCCc-GCCgCGCUc -3'
miRNA:   3'- -GGGG-GGGGGGGGGGGGaaCGG-GUGAc -5'
21706 5' -68.3 NC_004812.1 + 33142 0.68 0.287056
Target:  5'- gCCCCUCCCUCUCUCCC---CCCGCa- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 33322 0.67 0.325911
Target:  5'- gUCCCCCCCgCCCCCCUgcgguuuCUCAUc- -3'
miRNA:   3'- gGGGGGGGGgGGGGGGAac-----GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 33868 0.67 0.325911
Target:  5'- gCgCCCUCUCCCCgCCC--GCCCGCa- -3'
miRNA:   3'- -GgGGGGGGGGGGgGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34056 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 34307 0.68 0.27494
Target:  5'- gCCgCCCgCCUCCCCCCggcgGCCCu--- -3'
miRNA:   3'- -GGgGGGgGGGGGGGGGaa--CGGGugac -5'
21706 5' -68.3 NC_004812.1 + 34346 0.71 0.201357
Target:  5'- gCCCCCCgugguCCCCguggCCCCCC--GCCCGCg- -3'
miRNA:   3'- -GGGGGG-----GGGG----GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34378 0.68 0.280946
Target:  5'- gCCCCgCCgCCgagCCCCCCgcGCCCGCc- -3'
miRNA:   3'- -GGGGgGGgGG---GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34731 0.66 0.38357
Target:  5'- gCCCCgCCCCaggCCCCgCCCCUcUGCgCCG-UGg -3'
miRNA:   3'- -GGGG-GGGG---GGGG-GGGGA-ACG-GGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 34850 0.66 0.38357
Target:  5'- gCCCCCgCCUCCCggaggcccggcgCCCCCccGCCgCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGG------------GGGGGaaCGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 38047 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21706 5' -68.3 NC_004812.1 + 38108 0.78 0.059281
Target:  5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 38656 0.72 0.156137
Target:  5'- gCCCgCCUCCCCCCCCgugcgUGCgCGCc- -3'
miRNA:   3'- gGGGgGGGGGGGGGGGa----ACGgGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.