miRNA display CGI


Results 1 - 20 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 156575 0.67 0.325232
Target:  5'- cCCCCCgaacgaaCCCCCgCCCCCCgaaaacGCgCGCg- -3'
miRNA:   3'- -GGGGG-------GGGGG-GGGGGGaa----CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 156407 0.67 0.325911
Target:  5'- gCCCCCCCUCCCCgcguuUCCgggGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGG-----GGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 156358 0.73 0.137802
Target:  5'- aCCCCCCCCUCCUCCCgcgcgggagccuuggGcCCCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-------------C-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 154786 0.66 0.391238
Target:  5'- gUCCCCUCCCCCgacggggcggCCCCgacGUCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGG----------GGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 154643 0.8 0.039796
Target:  5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 154561 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 153517 0.68 0.27494
Target:  5'- gCgCCUCCCCCgCCCC--GCCCGcCUGg -3'
miRNA:   3'- gGgGGGGGGGGgGGGGaaCGGGU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 153508 0.77 0.075863
Target:  5'- aCUCCCUCCCCCUCCCCUccccCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 153289 0.66 0.40687
Target:  5'- gCCCCUCgggCCCCUCCCCUgGCUC-CUc -3'
miRNA:   3'- gGGGGGG---GGGGGGGGGAaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 153224 0.69 0.246446
Target:  5'- gCCCUCCgCCgCCgCCCUCgagGCCUACUGc -3'
miRNA:   3'- -GGGGGGgGG-GG-GGGGGaa-CGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 153093 0.69 0.269037
Target:  5'- -gCCCCgCCCCCggggccgccggCCCCggGCCCGCg- -3'
miRNA:   3'- ggGGGGgGGGGG-----------GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151986 0.72 0.152517
Target:  5'- uCCCgCCCCCCCgCCCCUaagGgCCACc- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151835 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 151609 0.67 0.319172
Target:  5'- gCCgCCCCCgCCCgCCCUgcgGCgCACg- -3'
miRNA:   3'- -GGgGGGGGgGGGgGGGAa--CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 151546 0.66 0.375251
Target:  5'- gCCCCCCgagUCUCCCgCCCggGCCCccgugaccgcggcGCUGc -3'
miRNA:   3'- -GGGGGG---GGGGGGgGGGaaCGGG-------------UGAC- -5'
21706 5' -68.3 NC_004812.1 + 151452 0.71 0.192364
Target:  5'- gCCCCCgCCCCUCUCUgCUucugGCCCGCg- -3'
miRNA:   3'- -GGGGG-GGGGGGGGGgGAa---CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151339 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 151279 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 151227 0.68 0.299588
Target:  5'- aCCCCgaCCCCCCUCCCgCCgcgggagaGCCCGaguCUGc -3'
miRNA:   3'- -GGGG--GGGGGGGGGG-GGaa------CGGGU---GAC- -5'
21706 5' -68.3 NC_004812.1 + 151123 0.68 0.31057
Target:  5'- uCCUCCUCCCgugggugacccucgCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGGGGGGG--------------GGGGGGGaa-CGGG-UgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.