miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 151060 0.67 0.317837
Target:  5'- gUCCUCCUCCgCCCCUCUggggggcccccgGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151012 0.72 0.155772
Target:  5'- cCCCCugggggaCCCCgCCCCCCCCgugGCCCuGgUGg -3'
miRNA:   3'- -GGGG-------GGGG-GGGGGGGGaa-CGGG-UgAC- -5'
21706 5' -68.3 NC_004812.1 + 150909 0.73 0.130477
Target:  5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3'
miRNA:   3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 150765 0.69 0.268453
Target:  5'- uUCCCCCCgCCUCCCgagcgcgCCgccgGCCCGCa- -3'
miRNA:   3'- -GGGGGGGgGGGGGG-------GGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150732 0.67 0.361173
Target:  5'- gCCCgCgCCCgCgCCCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGgGgGGG-G-GGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150651 0.71 0.192364
Target:  5'- gCCCCCCCgcggCCUCCCCgggCCcUGCCCcCUGu -3'
miRNA:   3'- -GGGGGGG----GGGGGGG---GGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 150608 0.72 0.159836
Target:  5'- cCCCCUUCCCCucgCCCCCCggcGCCUACc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150565 0.68 0.30861
Target:  5'- gCCUUCCCCUCgCCgCCCUacggcgcgcagucgcUGCCCGCg- -3'
miRNA:   3'- -GGGGGGGGGGgGG-GGGA---------------ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150533 0.7 0.205989
Target:  5'- cCCCCUUCCCCucgCCCCCCUUcGCCUcCg- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGAA-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 150527 0.79 0.049821
Target:  5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150481 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 150465 0.78 0.05783
Target:  5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3'
miRNA:   3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150303 0.7 0.222433
Target:  5'- gCCCCCCgcgugcccgggggcgCCgCUCCCCCUggccgUGCCC-CUGg -3'
miRNA:   3'- -GGGGGG---------------GGgGGGGGGGA-----ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 150277 0.68 0.312539
Target:  5'- gCCCCCUgCUgCCCCUCcUGCCCGg-- -3'
miRNA:   3'- -GGGGGGgGGgGGGGGGaACGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 150124 0.7 0.230551
Target:  5'- gCCCCCCCUUgCCUguaCCCgcaggGCCCGCUc -3'
miRNA:   3'- -GGGGGGGGGgGGG---GGGaa---CGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 150088 0.8 0.042896
Target:  5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3'
miRNA:   3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 149999 0.72 0.166304
Target:  5'- uCCCCCCCaccccacccacccaCCCCCgCCUCUguuucGCCCGCa- -3'
miRNA:   3'- -GGGGGGG--------------GGGGG-GGGGAa----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149972 0.67 0.346755
Target:  5'- cUCCCCCaCCCCCUCCCCU--CUCuCUu -3'
miRNA:   3'- -GGGGGG-GGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 149914 0.68 0.29327
Target:  5'- uCUCUCCCCCCCaacacacacgCCCCCUgucGUCCAUc- -3'
miRNA:   3'- -GGGGGGGGGGG----------GGGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149870 0.68 0.287056
Target:  5'- aCCCCCCacuaaCUCCCUCUCUUGUUCugUc -3'
miRNA:   3'- -GGGGGGg----GGGGGGGGGAACGGGugAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.