miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 149676 0.75 0.09684
Target:  5'- uCCCCgcuUCCCCCCCaCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGG---GGGGGGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149644 1.08 0.000333
Target:  5'- cCCCCCCCCCCCCCCCCUUGCCCACUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAACGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 149128 0.74 0.111948
Target:  5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5'
21706 5' -68.3 NC_004812.1 + 149093 0.78 0.060767
Target:  5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 148928 0.73 0.142108
Target:  5'- aCCCCCgcgCCCgCCCaCCCCCgcucccgGCCCGCg- -3'
miRNA:   3'- -GGGGG---GGG-GGG-GGGGGaa-----CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 148665 0.7 0.220939
Target:  5'- gCCCCCCCCggacgCgCCCCCCggccgcgccggcgcGCCCGCa- -3'
miRNA:   3'- -GGGGGGGG-----GgGGGGGGaa------------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 148598 0.69 0.243196
Target:  5'- gCCCgCgCCCCCCggggucgcgggagcgCCCCCCUgaccggcGCCCGCg- -3'
miRNA:   3'- -GGG-G-GGGGGG---------------GGGGGGAa------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 147979 0.69 0.235751
Target:  5'- gCCCgCUCCCCCgCCCCUcgcGUCCAUUa -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 147754 0.73 0.135534
Target:  5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 146954 0.68 0.289529
Target:  5'- gUCCCCCUCCCCgguggcgcugaguuuCCCCCgacgcaCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGG---------------GGGGGaac---GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 146520 0.78 0.056413
Target:  5'- aCCCCCacagcgaCCCCCaCCCCCguguugUGCCCACa- -3'
miRNA:   3'- -GGGGGg------GGGGG-GGGGGa-----ACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 146458 0.66 0.38357
Target:  5'- gCCCCCCCCCCgUCgCCgucugucGCUCcCUGc -3'
miRNA:   3'- -GGGGGGGGGGgGGgGGaa-----CGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 146208 0.66 0.376002
Target:  5'- aCCUCCgugauCCCCCUCaCCCCgccgGCCCAg-- -3'
miRNA:   3'- -GGGGG-----GGGGGGG-GGGGaa--CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 146139 0.66 0.375251
Target:  5'- uCCCCCCCgcggUCCCCacccggcauggaaCCCCUgcgGCUCGCc- -3'
miRNA:   3'- -GGGGGGG----GGGGG-------------GGGGAa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 145890 0.75 0.094517
Target:  5'- gCCCCgCCgCCCCUCCCCCUggaGCCCG-UGg -3'
miRNA:   3'- -GGGG-GG-GGGGGGGGGGAa--CGGGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 145258 0.74 0.117457
Target:  5'- aCCgCCCCCCUCCCgUCgaGCCCACa- -3'
miRNA:   3'- -GGgGGGGGGGGGGgGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 145016 0.7 0.220442
Target:  5'- aCCCUgcucgcgcggcgUCCCUCCCCCCCggUGCCCcaGCg- -3'
miRNA:   3'- -GGGG------------GGGGGGGGGGGGa-ACGGG--UGac -5'
21706 5' -68.3 NC_004812.1 + 144688 0.68 0.280946
Target:  5'- aCCCCCgCCCCgCCgCCCCac-CCCACc- -3'
miRNA:   3'- -GGGGGgGGGG-GG-GGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 143773 0.66 0.414832
Target:  5'- uCCUCCCgCgCCCCaucggCCCUUccccGCCCACUc -3'
miRNA:   3'- -GGGGGGgGgGGGG-----GGGAA----CGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 143146 0.67 0.361173
Target:  5'- gUCCCCgcgacgccaCCCCCCaCCCCCgaGaCCACg- -3'
miRNA:   3'- -GGGGG---------GGGGGG-GGGGGaaCgGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.