miRNA display CGI


Results 61 - 80 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 142912 0.68 0.306011
Target:  5'- aCCCgCCagCCCCUCCUgcggGCCCGCg- -3'
miRNA:   3'- gGGGgGGggGGGGGGGAa---CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 142145 0.68 0.299588
Target:  5'- gCCCCgCCCCCgCgCCCUccgGCCaCACg- -3'
miRNA:   3'- -GGGGgGGGGGgGgGGGAa--CGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 140690 0.66 0.368536
Target:  5'- aCCCCgCgaCCCCaCCCCC--GCCCGCc- -3'
miRNA:   3'- -GGGGgGg-GGGG-GGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 139907 0.72 0.16747
Target:  5'- aCCCCCCCacaCCCCCCUgUUuCCCuucCUGa -3'
miRNA:   3'- -GGGGGGGg--GGGGGGGgAAcGGGu--GAC- -5'
21706 5' -68.3 NC_004812.1 + 139856 0.67 0.353192
Target:  5'- gCCCCCgCgCCCCCCgacugagCCCCagGCCCcCUc -3'
miRNA:   3'- -GGGGG-G-GGGGGG-------GGGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 139820 0.72 0.171408
Target:  5'- aCUCCCCCCgCCCCaCCUggGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGgGGGG-GGGaaCGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 139777 0.7 0.230551
Target:  5'- aCUCCCaCCCCUaCCCCCCgacCCCGCg- -3'
miRNA:   3'- -GGGGG-GGGGG-GGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 139267 0.71 0.192364
Target:  5'- aCCCCCgCCCCCaccaccaCCCCCgccCCCACc- -3'
miRNA:   3'- -GGGGG-GGGGGg------GGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 139231 0.71 0.192364
Target:  5'- aCCCCCgCCCCCaccaccaCCCCCgccCCCACc- -3'
miRNA:   3'- -GGGGG-GGGGGg------GGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 139195 0.71 0.192364
Target:  5'- aCCCCCgCCCCCaccaccaCCCCCgccCCCACc- -3'
miRNA:   3'- -GGGGG-GGGGGg------GGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 138836 0.66 0.391238
Target:  5'- aCCCCgUUCUCgCCCCCacGCCCGCc- -3'
miRNA:   3'- -GGGGgGGGGGgGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 138678 0.8 0.045093
Target:  5'- aCCCCCUCUCCCCCCCCgaccggGCCuCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa----CGG-GUGac -5'
21706 5' -68.3 NC_004812.1 + 136956 0.67 0.361173
Target:  5'- gCCacggaCCCCCUCgCCCUggcgGCCCACg- -3'
miRNA:   3'- gGGg----GGGGGGGgGGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 136719 0.75 0.092247
Target:  5'- gCCCCCagaCCCacgaCCCCCCCCgcGCCCACg- -3'
miRNA:   3'- -GGGGG---GGG----GGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 134636 0.73 0.145503
Target:  5'- gCCCUgCCCCCCUCCCCgcgcgaGCaCCACg- -3'
miRNA:   3'- -GGGGgGGGGGGGGGGGaa----CG-GGUGac -5'
21706 5' -68.3 NC_004812.1 + 133636 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133610 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133584 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133558 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133532 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.