miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 133506 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133480 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133454 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133428 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133402 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133376 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133350 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133324 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133298 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 133024 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 132477 0.74 0.120306
Target:  5'- cCCCCCCUUCCCCCaCCCccGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGGGGG-GGGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 132444 0.7 0.220442
Target:  5'- uCCCCUCCCCCCacaaCCCC--GCCC-Cg- -3'
miRNA:   3'- -GGGGGGGGGGGg---GGGGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 132311 0.73 0.138785
Target:  5'- cCCCUUCCCUUCCCCCCUUcCCCGUUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 132277 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132251 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132225 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132199 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132173 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132147 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132121 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.