miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 132095 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132069 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132043 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 132017 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131991 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131965 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131939 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131913 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131887 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131861 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131835 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131809 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131783 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131757 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 131726 0.73 0.12924
Target:  5'- cCCCCUUCCCUCCCCCCUU-CCCu--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGugac -5'
21706 5' -68.3 NC_004812.1 + 131669 0.66 0.40687
Target:  5'- uUCCgCCCUCUCUCCCC--GCCC-CUGu -3'
miRNA:   3'- -GGGgGGGGGGGGGGGGaaCGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 131273 0.71 0.179534
Target:  5'- gCCCCUCUCCUCUCCCCguccGCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa--CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 131181 0.68 0.299588
Target:  5'- aCCCCgCCCCCgggaCCCCCCUgcgGuUCUACg- -3'
miRNA:   3'- -GGGG-GGGGGg---GGGGGGAa--C-GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 130387 0.67 0.346755
Target:  5'- gCCCCUcgagUCCCgCCUCCCagaGCCUGCUGg -3'
miRNA:   3'- -GGGGG----GGGGgGGGGGGaa-CGGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 128891 0.75 0.092247
Target:  5'- gCCCCCCgCCCCCCCUCguccguccUGUCC-CUGg -3'
miRNA:   3'- -GGGGGGgGGGGGGGGGa-------ACGGGuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.