Results 1 - 20 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 146520 | 0.78 | 0.056413 |
Target: 5'- aCCCCCacagcgaCCCCCaCCCCCguguugUGCCCACa- -3' miRNA: 3'- -GGGGGg------GGGGG-GGGGGa-----ACGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 119187 | 0.8 | 0.042896 |
Target: 5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3' miRNA: 3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 138678 | 0.8 | 0.045093 |
Target: 5'- aCCCCCUCUCCCCCCCCgaccggGCCuCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaa----CGG-GUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 126402 | 0.8 | 0.045093 |
Target: 5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3' miRNA: 3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 29603 | 0.79 | 0.0474 |
Target: 5'- gCUCCCCCCCCCCCgCCCUacCCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGG-GGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150527 | 0.79 | 0.049821 |
Target: 5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115926 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115966 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 127056 | 0.78 | 0.056413 |
Target: 5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 125933 | 0.8 | 0.040804 |
Target: 5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150481 | 0.8 | 0.039796 |
Target: 5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 154643 | 0.8 | 0.039796 |
Target: 5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 125784 | 0.91 | 0.006115 |
Target: 5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 127173 | 0.85 | 0.018228 |
Target: 5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116103 | 0.84 | 0.019666 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 126569 | 0.82 | 0.031754 |
Target: 5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3' miRNA: 3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 7146 | 0.82 | 0.031754 |
Target: 5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3' miRNA: 3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 115868 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116006 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 116064 | 0.8 | 0.039796 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGuGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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