Results 41 - 60 of 401 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 7146 | 0.82 | 0.031754 |
Target: 5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3' miRNA: 3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 126569 | 0.82 | 0.031754 |
Target: 5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3' miRNA: 3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 116103 | 0.84 | 0.019666 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 127173 | 0.85 | 0.018228 |
Target: 5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 125784 | 0.91 | 0.006115 |
Target: 5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 126402 | 0.8 | 0.045093 |
Target: 5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3' miRNA: 3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 29603 | 0.79 | 0.0474 |
Target: 5'- gCUCCCCCCCCCCCgCCCUacCCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGG-GGGAacGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 8101 | 0.76 | 0.083673 |
Target: 5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3' miRNA: 3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 122607 | 0.77 | 0.075863 |
Target: 5'- aCUCCCUCCCCCUCCCCUccccCCCACg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAac--GGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 3155 | 0.77 | 0.070469 |
Target: 5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 125764 | 0.77 | 0.068754 |
Target: 5'- uCCCCCCCCCCCCCCCC---CCCn--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaacGGGugac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 127344 | 0.78 | 0.060918 |
Target: 5'- uCCCCCCUCCUCCCCUCUccccgcgcagccccgGCCCGCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa--------------CGGGUGAc -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 118192 | 0.78 | 0.060767 |
Target: 5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3' miRNA: 3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 7207 | 0.78 | 0.059281 |
Target: 5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 119564 | 0.78 | 0.05783 |
Target: 5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3' miRNA: 3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 146520 | 0.78 | 0.056413 |
Target: 5'- aCCCCCacagcgaCCCCCaCCCCCguguugUGCCCACa- -3' miRNA: 3'- -GGGGGg------GGGGG-GGGGGa-----ACGGGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 127056 | 0.78 | 0.056413 |
Target: 5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 115966 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 115926 | 0.78 | 0.055031 |
Target: 5'- cCCCCCUCCCCUCCCCCgcGCCCc--- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGugac -5' |
|||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 150527 | 0.79 | 0.049821 |
Target: 5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home