miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 120934 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 118227 0.74 0.111948
Target:  5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5'
21706 5' -68.3 NC_004812.1 + 119750 0.74 0.114672
Target:  5'- gCCCCCCCgCgCCUCCCCgggcccUGCCCcCUGu -3'
miRNA:   3'- -GGGGGGGgG-GGGGGGGa-----ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 125869 0.74 0.114672
Target:  5'- uCCCCCUCCCgUCCCCCUcccGCcCCGCUc -3'
miRNA:   3'- -GGGGGGGGGgGGGGGGAa--CG-GGUGAc -5'
21706 5' -68.3 NC_004812.1 + 145258 0.74 0.117457
Target:  5'- aCCgCCCCCCUCCCgUCgaGCCCACa- -3'
miRNA:   3'- -GGgGGGGGGGGGGgGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 8781 0.74 0.120306
Target:  5'- aCCCCCCCCacuccggccuCCUCCCCCUcccGCCCggGCUa -3'
miRNA:   3'- -GGGGGGGG----------GGGGGGGGAa--CGGG--UGAc -5'
21706 5' -68.3 NC_004812.1 + 132477 0.74 0.120306
Target:  5'- cCCCCCCUUCCCCCaCCCccGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGGGGG-GGGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 126243 0.75 0.104136
Target:  5'- gCCCCUCCCCUCCCCCgccGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 154561 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 55744 0.75 0.099217
Target:  5'- cCCUCCCCCgCCUCCCCCgcgGCCC-Cg- -3'
miRNA:   3'- -GGGGGGGG-GGGGGGGGaa-CGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 122607 0.77 0.075863
Target:  5'- aCUCCCUCCCCCUCCCCUccccCCCACg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAac--GGGUGac -5'
21706 5' -68.3 NC_004812.1 + 8101 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 56776 0.75 0.090028
Target:  5'- cCCCCUCCUCCCCCCCCUc-CCCGa-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 136719 0.75 0.092247
Target:  5'- gCCCCCagaCCCacgaCCCCCCCCgcGCCCACg- -3'
miRNA:   3'- -GGGGG---GGG----GGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 69541 0.75 0.094517
Target:  5'- gCCgCCCCCCCgCgCCCC-UGCCCGCg- -3'
miRNA:   3'- -GGgGGGGGGGgG-GGGGaACGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 145890 0.75 0.094517
Target:  5'- gCCCCgCCgCCCCUCCCCCUggaGCCCG-UGg -3'
miRNA:   3'- -GGGG-GG-GGGGGGGGGGAa--CGGGUgAC- -5'
21706 5' -68.3 NC_004812.1 + 120378 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 120438 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 65414 0.75 0.099217
Target:  5'- gCCgCgCCCCCCgCCCCCgaGCCCGCg- -3'
miRNA:   3'- -GGgGgGGGGGG-GGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 131726 0.73 0.12924
Target:  5'- cCCCCUUCCCUCCCCCCUU-CCCu--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGugac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.