Results 1 - 20 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 5' | -68.3 | NC_004812.1 | + | 149644 | 1.08 | 0.000333 |
Target: 5'- cCCCCCCCCCCCCCCCCUUGCCCACUGu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAACGGGUGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 1548 | 0.78 | 0.056413 |
Target: 5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 38108 | 0.78 | 0.059281 |
Target: 5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 84756 | 0.66 | 0.414832 |
Target: 5'- gCCgaCCCCCaUCCCCCggGCCCGgaGa -3' miRNA: 3'- gGGggGGGGG-GGGGGGaaCGGGUgaC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 84272 | 0.87 | 0.012783 |
Target: 5'- gCCCCCCCUCCCCCCCgcgGCCCGCc- -3' miRNA: 3'- gGGGGGGGGGGGGGGGaa-CGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 99357 | 0.85 | 0.017773 |
Target: 5'- gCCCCCCCCCCCCCCagcGCCCGCc- -3' miRNA: 3'- gGGGGGGGGGGGGGGgaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 1060 | 0.82 | 0.031754 |
Target: 5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3' miRNA: 3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 38047 | 0.82 | 0.031754 |
Target: 5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3' miRNA: 3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 24972 | 0.8 | 0.039796 |
Target: 5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 25018 | 0.79 | 0.049821 |
Target: 5'- cCCCCUCCCCUCCCUCCUU-CCCACc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150088 | 0.8 | 0.042896 |
Target: 5'- gCCCCCCgCCCCCCCC-UGCUC-CUGg -3' miRNA: 3'- gGGGGGGgGGGGGGGGaACGGGuGAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 29134 | 0.8 | 0.039796 |
Target: 5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 276 | 0.91 | 0.006115 |
Target: 5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 894 | 0.8 | 0.045093 |
Target: 5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3' miRNA: 3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 18629 | 0.88 | 0.010701 |
Target: 5'- cCCCCCCCCCCCCCCCCgacCCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 56495 | 0.81 | 0.036915 |
Target: 5'- gCCUCCCCUCCCCUCCCccGCCCGCg- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 101896 | 0.79 | 0.048596 |
Target: 5'- cCCCCUCCCCUCCCCCCUcGUCCcccucCUGg -3' miRNA: 3'- -GGGGGGGGGGGGGGGGAaCGGGu----GAC- -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 150465 | 0.78 | 0.05783 |
Target: 5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3' miRNA: 3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 40383 | 0.87 | 0.012783 |
Target: 5'- cCCCCCCCCCCCCCCCCauUUGCgCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGG--AACGgGUGac -5' |
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21706 | 5' | -68.3 | NC_004812.1 | + | 1665 | 0.85 | 0.018228 |
Target: 5'- cCCCUCCCCCCCCCCCCgcGUCCGCc- -3' miRNA: 3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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