miRNA display CGI


Results 21 - 40 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 256 0.77 0.068754
Target:  5'- uCCCCCCCCCCCCCCCC---CCCn--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 38108 0.78 0.059281
Target:  5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 29134 0.8 0.039796
Target:  5'- cCUCCCCCCCUCCCCCCggcGCCCGg-- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 40383 0.87 0.012783
Target:  5'- cCCCCCCCCCCCCCCCCauUUGCgCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGG--AACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 735 0.75 0.104136
Target:  5'- gCCCCUCCCCUCCCCCgccGCgCGCg- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 39002 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 1548 0.78 0.056413
Target:  5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 18629 0.88 0.010701
Target:  5'- cCCCCCCCCCCCCCCCCgacCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 85732 0.76 0.079677
Target:  5'- cCCCUCCCCgCCCCCCCCgcGCagCCACg- -3'
miRNA:   3'- -GGGGGGGG-GGGGGGGGaaCG--GGUGac -5'
21706 5' -68.3 NC_004812.1 + 276 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 150465 0.78 0.05783
Target:  5'- gCCCCCgaCCCCCUUCCCCUcGCCCGCc- -3'
miRNA:   3'- -GGGGG--GGGGGGGGGGGAaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34056 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 894 0.8 0.045093
Target:  5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3'
miRNA:   3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 24972 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 1060 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5'
21706 5' -68.3 NC_004812.1 + 84272 0.87 0.012783
Target:  5'- gCCCCCCCUCCCCCCCgcgGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 9898 0.74 0.114672
Target:  5'- cCUUUCCCCCCCCCCCCgaGUCUAUg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151835 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 151279 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 40276 0.76 0.083673
Target:  5'- cCCCCCucccuacaCCCCCCCCCCCaUGCUCGa-- -3'
miRNA:   3'- -GGGGG--------GGGGGGGGGGGaACGGGUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.