miRNA display CGI


Results 41 - 60 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 29052 0.75 0.100183
Target:  5'- cCCCCUCCCCCgcgCCCCCCgccgccgaccgagGCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGG---GGGGGGaa-----------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 1548 0.78 0.056413
Target:  5'- cCCCCCCCCUUCCCCCCUacGCgCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 18629 0.88 0.010701
Target:  5'- cCCCCCCCCCCCCCCCCgacCCCGCc- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151339 0.75 0.09684
Target:  5'- gCCUCCCCCCgCCUCCgUGCCC-CUGc -3'
miRNA:   3'- gGGGGGGGGGgGGGGGaACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 276 0.91 0.006115
Target:  5'- cCCCCCCCCCCCCCCCCUcgGCCCcCUc -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAa-CGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 151986 0.72 0.152517
Target:  5'- uCCCgCCCCCCCgCCCCUaagGgCCACc- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 84272 0.87 0.012783
Target:  5'- gCCCCCCCUCCCCCCCgcgGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGGaa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 54342 0.72 0.148972
Target:  5'- aCCCauCCCUCCCCCCUCCUcGCCgACc- -3'
miRNA:   3'- -GGG--GGGGGGGGGGGGGAaCGGgUGac -5'
21706 5' -68.3 NC_004812.1 + 74939 0.73 0.138785
Target:  5'- gCCCCCCgUCCaCCCCCCggaggUGgCCACg- -3'
miRNA:   3'- -GGGGGGgGGG-GGGGGGa----ACgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 150909 0.73 0.130477
Target:  5'- aCCCCCgCCCCCCcguggcccugggagaCCCCCggccccccgUGCCC-CUGc -3'
miRNA:   3'- -GGGGG-GGGGGG---------------GGGGGa--------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 121042 0.73 0.128015
Target:  5'- gCCCCCgCCgCCCCCUCCCUcuauccgggccccGCCCGCg- -3'
miRNA:   3'- -GGGGG-GG-GGGGGGGGGAa------------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 9898 0.74 0.114672
Target:  5'- cCUUUCCCCCCCCCCCCgaGUCUAUg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 151835 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 128891 0.75 0.092247
Target:  5'- gCCCCCCgCCCCCCCUCguccguccUGUCC-CUGg -3'
miRNA:   3'- -GGGGGGgGGGGGGGGGa-------ACGGGuGAC- -5'
21706 5' -68.3 NC_004812.1 + 85732 0.76 0.079677
Target:  5'- cCCCUCCCCgCCCCCCCCgcGCagCCACg- -3'
miRNA:   3'- -GGGGGGGG-GGGGGGGGaaCG--GGUGac -5'
21706 5' -68.3 NC_004812.1 + 256 0.77 0.068754
Target:  5'- uCCCCCCCCCCCCCCCC---CCCn--- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacGGGugac -5'
21706 5' -68.3 NC_004812.1 + 38108 0.78 0.059281
Target:  5'- cCCUCCUCCCCCUCCCCUcGCCuCGcCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGG-GU-GAC- -5'
21706 5' -68.3 NC_004812.1 + 894 0.8 0.045093
Target:  5'- cCCCCaCCCCCCaCCCCCCUccCCCACg- -3'
miRNA:   3'- -GGGG-GGGGGG-GGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 24972 0.8 0.039796
Target:  5'- cCCCCCCCCCCUCCCCCUccCCCuCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAacGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 1060 0.82 0.031754
Target:  5'- uCCCCCCUCCCCCgCCCCUcccGCCCucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGG-GGGGAa--CGGGu-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.