miRNA display CGI


Results 61 - 80 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 151835 0.74 0.109285
Target:  5'- cCCCgCCCCCUCCCCCaCCgcGCCCGuCUc -3'
miRNA:   3'- -GGG-GGGGGGGGGGG-GGaaCGGGU-GAc -5'
21706 5' -68.3 NC_004812.1 + 6968 0.74 0.123218
Target:  5'- gCCCCCCCUUCCCCCaCCccGCCCcCa- -3'
miRNA:   3'- -GGGGGGGGGGGGGG-GGaaCGGGuGac -5'
21706 5' -68.3 NC_004812.1 + 99357 0.85 0.017773
Target:  5'- gCCCCCCCCCCCCCCagcGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGgaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 38047 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21706 5' -68.3 NC_004812.1 + 425 0.8 0.040804
Target:  5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 101896 0.79 0.048596
Target:  5'- cCCCCUCCCCUCCCCCCUcGUCCcccucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGGGu----GAC- -5'
21706 5' -68.3 NC_004812.1 + 149093 0.78 0.060767
Target:  5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34056 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 39002 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 149676 0.75 0.09684
Target:  5'- uCCCCgcuUCCCCCCCaCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGG---GGGGGGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 8049 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 7946 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 77191 0.73 0.12924
Target:  5'- aCCCCgCCCCCCaaagcggcggCCCCCgaGCCaGCUGg -3'
miRNA:   3'- -GGGGgGGGGGG----------GGGGGaaCGGgUGAC- -5'
21706 5' -68.3 NC_004812.1 + 147754 0.73 0.135534
Target:  5'- uCCCCCgCCCCaCCCCCC--GCCCGg-- -3'
miRNA:   3'- -GGGGGgGGGG-GGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 54342 0.72 0.148972
Target:  5'- aCCCauCCCUCCCCCCUCCUcGCCgACc- -3'
miRNA:   3'- -GGG--GGGGGGGGGGGGGAaCGGgUGac -5'
21706 5' -68.3 NC_004812.1 + 151986 0.72 0.152517
Target:  5'- uCCCgCCCCCCCgCCCCUaagGgCCACc- -3'
miRNA:   3'- -GGGgGGGGGGGgGGGGAa--CgGGUGac -5'
21706 5' -68.3 NC_004812.1 + 104690 0.72 0.159836
Target:  5'- cCUCCCCCCUCaCCCUCCUUccaCUCACUGc -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAAc--GGGUGAC- -5'
21706 5' -68.3 NC_004812.1 + 7516 0.72 0.163613
Target:  5'- aCCCCCgCCCCgcggcgcgccgCCCCUCCc-GCCCACUc -3'
miRNA:   3'- -GGGGG-GGGG-----------GGGGGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 85229 0.71 0.179534
Target:  5'- aCCCCCgCCUCgCCCguCCCCacGCCCACUu -3'
miRNA:   3'- -GGGGG-GGGG-GGG--GGGGaaCGGGUGAc -5'
21706 5' -68.3 NC_004812.1 + 7842 0.71 0.183724
Target:  5'- aCCCCUCgCCCUCCCCUccCCCGCg- -3'
miRNA:   3'- gGGGGGGgGGGGGGGGAacGGGUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.