miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 5' -68.3 NC_004812.1 + 6418 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6574 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6652 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 6756 0.71 0.196815
Target:  5'- uCCCUUCCCCCCUUCCCUUcCCCcCUu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGuGAc -5'
21706 5' -68.3 NC_004812.1 + 99274 0.7 0.205989
Target:  5'- uCCUCUCCCCCCCCCCCacacaCACa- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaacggGUGac -5'
21706 5' -68.3 NC_004812.1 + 38656 0.72 0.156137
Target:  5'- gCCCgCCUCCCCCCCCgugcgUGCgCGCc- -3'
miRNA:   3'- gGGGgGGGGGGGGGGGa----ACGgGUGac -5'
21706 5' -68.3 NC_004812.1 + 125801 0.72 0.152517
Target:  5'- gCCCUgCCCCCCCguggggCCCUcgGCCCGCg- -3'
miRNA:   3'- gGGGGgGGGGGGG------GGGAa-CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 99357 0.85 0.017773
Target:  5'- gCCCCCCCCCCCCCCagcGCCCGCc- -3'
miRNA:   3'- gGGGGGGGGGGGGGGgaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 38047 0.82 0.031754
Target:  5'- cCCaCCCCCCCCCCCCCCUucUGUUCucguCUGg -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGA--ACGGGu---GAC- -5'
21706 5' -68.3 NC_004812.1 + 425 0.8 0.040804
Target:  5'- cCCCUCCCCCCCUCCCCUUcCUCGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 101896 0.79 0.048596
Target:  5'- cCCCCUCCCCUCCCCCCUcGUCCcccucCUGg -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAaCGGGu----GAC- -5'
21706 5' -68.3 NC_004812.1 + 149093 0.78 0.060767
Target:  5'- gCCgCCCCCCCUCCCUCCUUucgcuccgGCCCACc- -3'
miRNA:   3'- -GG-GGGGGGGGGGGGGGAA--------CGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 34056 0.77 0.070469
Target:  5'- uCCCCUCCgCCCCCCCCCgcGCCCc--- -3'
miRNA:   3'- -GGGGGGG-GGGGGGGGGaaCGGGugac -5'
21706 5' -68.3 NC_004812.1 + 39002 0.76 0.083673
Target:  5'- gCCgCCCCCCCUCCCCCg-GCCCGg-- -3'
miRNA:   3'- -GGgGGGGGGGGGGGGGaaCGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 149676 0.75 0.09684
Target:  5'- uCCCCgcuUCCCCCCCaCCCCg-GCCCGCg- -3'
miRNA:   3'- -GGGG---GGGGGGGG-GGGGaaCGGGUGac -5'
21706 5' -68.3 NC_004812.1 + 149128 0.74 0.111948
Target:  5'- gUCCCCCCCCCaUCCCCCUcGCCgaaACg- -3'
miRNA:   3'- -GGGGGGGGGG-GGGGGGAaCGGg--UGac -5'
21706 5' -68.3 NC_004812.1 + 39682 0.74 0.120306
Target:  5'- aCCCCCCCCacuccggccuCCUCCCCCUcccGCCCggGCUa -3'
miRNA:   3'- -GGGGGGGG----------GGGGGGGGAa--CGGG--UGAc -5'
21706 5' -68.3 NC_004812.1 + 84836 0.73 0.128015
Target:  5'- aCCCCCgCCCCCCCgCCUgucgcagcgaccgGCCCAa-- -3'
miRNA:   3'- -GGGGGgGGGGGGGgGGAa------------CGGGUgac -5'
21706 5' -68.3 NC_004812.1 + 108772 0.73 0.132353
Target:  5'- cCCCUCUCCCCUCCCCCaccGCCCuuGCg- -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGaa-CGGG--UGac -5'
21706 5' -68.3 NC_004812.1 + 6803 0.73 0.138785
Target:  5'- cCCCUUCCCUUCCCCCCUUcCCCGUUGu -3'
miRNA:   3'- -GGGGGGGGGGGGGGGGAAcGGGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.