miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21709 3' -53.9 NC_004812.1 + 28723 0.66 0.973654
Target:  5'- --cUACCUGGCGCugGaCcgCgACGCc -3'
miRNA:   3'- cccAUGGACCGCGugCaGaaGaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 101138 0.66 0.973654
Target:  5'- ---gGCUUcgcGGCGCGCGUgcgCUUCUGCGa -3'
miRNA:   3'- cccaUGGA---CCGCGUGCA---GAAGAUGCg -5'
21709 3' -53.9 NC_004812.1 + 154231 0.66 0.973654
Target:  5'- --cUACCUGGCGCugGaCcgCgACGCc -3'
miRNA:   3'- cccAUGGACCGCGugCaGaaGaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 17628 0.66 0.970883
Target:  5'- -cGUGuCCUGGUGguCGUCgg--ACGCg -3'
miRNA:   3'- ccCAU-GGACCGCguGCAGaagaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 32186 0.66 0.970883
Target:  5'- cGGGUGCCUccgGGC-CACGUCcagC-ACGg -3'
miRNA:   3'- -CCCAUGGA---CCGcGUGCAGaa-GaUGCg -5'
21709 3' -53.9 NC_004812.1 + 136765 0.66 0.970883
Target:  5'- cGGUuCUgUGGCGCGCG-CUg-UACGCg -3'
miRNA:   3'- cCCAuGG-ACCGCGUGCaGAagAUGCG- -5'
21709 3' -53.9 NC_004812.1 + 65514 0.66 0.970012
Target:  5'- aGGGgacggcgcgccCCUGGCGCcCccccucgcccccgGUCUUCgagACGCg -3'
miRNA:   3'- -CCCau---------GGACCGCGuG-------------CAGAAGa--UGCG- -5'
21709 3' -53.9 NC_004812.1 + 145930 0.66 0.967908
Target:  5'- -uGUACCUGGUG-ACGUggUUggcgCUGCGCu -3'
miRNA:   3'- ccCAUGGACCGCgUGCA--GAa---GAUGCG- -5'
21709 3' -53.9 NC_004812.1 + 85415 0.66 0.967908
Target:  5'- ---cGCCUGGCGCGgcccgcggUGUCgcgcUCUACGg -3'
miRNA:   3'- cccaUGGACCGCGU--------GCAGa---AGAUGCg -5'
21709 3' -53.9 NC_004812.1 + 55693 0.66 0.967908
Target:  5'- cGGUGgCggugGGCGCGCGcCUgcacccgcgcUCgGCGCa -3'
miRNA:   3'- cCCAUgGa---CCGCGUGCaGA----------AGaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 117375 0.66 0.967908
Target:  5'- cGGGcGCCUGGCcacGCGCGUggccCgggCcACGCu -3'
miRNA:   3'- -CCCaUGGACCG---CGUGCA----Gaa-GaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 99286 0.66 0.967908
Target:  5'- gGGGU-CCaGGCGC-CGgcagacCUGCGCg -3'
miRNA:   3'- -CCCAuGGaCCGCGuGCagaa--GAUGCG- -5'
21709 3' -53.9 NC_004812.1 + 138863 0.66 0.964724
Target:  5'- cGGUACCccaggacaUGGCcUACGUCUcCgcgGCGCc -3'
miRNA:   3'- cCCAUGG--------ACCGcGUGCAGAaGa--UGCG- -5'
21709 3' -53.9 NC_004812.1 + 54542 0.66 0.964724
Target:  5'- uGGUGCCcGGCGCGCccg----GCGCg -3'
miRNA:   3'- cCCAUGGaCCGCGUGcagaagaUGCG- -5'
21709 3' -53.9 NC_004812.1 + 44023 0.66 0.964724
Target:  5'- aGGaGgcuCCggcGGcCGCGCGUCacCUGCGCg -3'
miRNA:   3'- -CC-Cau-GGa--CC-GCGUGCAGaaGAUGCG- -5'
21709 3' -53.9 NC_004812.1 + 10276 0.66 0.964724
Target:  5'- ---aGCCgacGGCGCGCGUUUgccgGCGCc -3'
miRNA:   3'- cccaUGGa--CCGCGUGCAGAaga-UGCG- -5'
21709 3' -53.9 NC_004812.1 + 109149 0.66 0.964724
Target:  5'- cGGGUGacgcGGCucacccGCAgCGUCUUCUGCGa -3'
miRNA:   3'- -CCCAUgga-CCG------CGU-GCAGAAGAUGCg -5'
21709 3' -53.9 NC_004812.1 + 126781 0.66 0.964724
Target:  5'- cGGGUggcGCCUcuGCGCGC-UCUcgUCgUACGCg -3'
miRNA:   3'- -CCCA---UGGAc-CGCGUGcAGA--AG-AUGCG- -5'
21709 3' -53.9 NC_004812.1 + 153302 0.66 0.964394
Target:  5'- ---gGCCUGGCGCGCcgcgcucGcCUUCgacccGCGCg -3'
miRNA:   3'- cccaUGGACCGCGUG-------CaGAAGa----UGCG- -5'
21709 3' -53.9 NC_004812.1 + 27794 0.66 0.964394
Target:  5'- ---gGCCUGGCGCGCcgcgcucGcCUUCgacccGCGCg -3'
miRNA:   3'- cccaUGGACCGCGUG-------CaGAAGa----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.