miRNA display CGI


Results 1 - 20 of 523 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21709 5' -62.7 NC_004812.1 + 74061 0.66 0.620595
Target:  5'- gGGcGGCAGcGGCgGGCgCGCgCGGGC-Cg -3'
miRNA:   3'- gCU-CCGUCuUCGgCCG-GCG-GUCCGaG- -5'
21709 5' -62.7 NC_004812.1 + 77971 0.66 0.620595
Target:  5'- aGAGGguGuccgGGCCGGCCuuCgAGcGCUCc -3'
miRNA:   3'- gCUCCguCu---UCGGCCGGc-GgUC-CGAG- -5'
21709 5' -62.7 NC_004812.1 + 32457 0.66 0.620595
Target:  5'- --cGGCAGAAguGCCGGCa--CAGGCg- -3'
miRNA:   3'- gcuCCGUCUU--CGGCCGgcgGUCCGag -5'
21709 5' -62.7 NC_004812.1 + 100329 0.66 0.620595
Target:  5'- -cAGGCccucGAGCgGGCCGCCgcGGGCg- -3'
miRNA:   3'- gcUCCGuc--UUCGgCCGGCGG--UCCGag -5'
21709 5' -62.7 NC_004812.1 + 69951 0.66 0.620595
Target:  5'- gGAGGCcgaggGGggGUCuGUgGCCggGGGCUCu -3'
miRNA:   3'- gCUCCG-----UCuuCGGcCGgCGG--UCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 3396 0.66 0.620595
Target:  5'- gCGGcGGCGGAGggcGCCGG-CGUguGGCUg -3'
miRNA:   3'- -GCU-CCGUCUU---CGGCCgGCGguCCGAg -5'
21709 5' -62.7 NC_004812.1 + 138770 0.66 0.620595
Target:  5'- uGuGGCGcucGAucCCGGCCGCCuGGgUCg -3'
miRNA:   3'- gCuCCGU---CUucGGCCGGCGGuCCgAG- -5'
21709 5' -62.7 NC_004812.1 + 79455 0.66 0.620595
Target:  5'- cCGcGGGCGGGcuGCCGGCCGagaCGcGGCg- -3'
miRNA:   3'- -GC-UCCGUCUu-CGGCCGGCg--GU-CCGag -5'
21709 5' -62.7 NC_004812.1 + 71393 0.66 0.620595
Target:  5'- gCGAGGCGGggGUcgcagCGGgCGCgGGGg-- -3'
miRNA:   3'- -GCUCCGUCuuCG-----GCCgGCGgUCCgag -5'
21709 5' -62.7 NC_004812.1 + 108064 0.66 0.620595
Target:  5'- uGAGGgGGAAGUCGGCgGCgGuGCg- -3'
miRNA:   3'- gCUCCgUCUUCGGCCGgCGgUcCGag -5'
21709 5' -62.7 NC_004812.1 + 124464 0.66 0.620595
Target:  5'- -cGGGCGGccGCgGcGCCGCCcGGGCg- -3'
miRNA:   3'- gcUCCGUCuuCGgC-CGGCGG-UCCGag -5'
21709 5' -62.7 NC_004812.1 + 107599 0.66 0.620595
Target:  5'- uCGuccGCGuGGGcCCGGCCGCCGgGGUUCa -3'
miRNA:   3'- -GCuc-CGUcUUC-GGCCGGCGGU-CCGAG- -5'
21709 5' -62.7 NC_004812.1 + 71117 0.66 0.620595
Target:  5'- --cGGuCGGAGGCgCGGgCGCCucggGGGUUCg -3'
miRNA:   3'- gcuCC-GUCUUCG-GCCgGCGG----UCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 128904 0.66 0.620595
Target:  5'- gCGGcGGCGGAGggcGCCGG-CGUguGGCUg -3'
miRNA:   3'- -GCU-CCGUCUU---CGGCCgGCGguCCGAg -5'
21709 5' -62.7 NC_004812.1 + 69424 0.66 0.620595
Target:  5'- -uGGGCccggAGGAcGCCGGCCGCaCGcGGCg- -3'
miRNA:   3'- gcUCCG----UCUU-CGGCCGGCG-GU-CCGag -5'
21709 5' -62.7 NC_004812.1 + 48151 0.66 0.620595
Target:  5'- uCGAGGCGcGgcGCCgggcGGCgGCCGcGGCg- -3'
miRNA:   3'- -GCUCCGU-CuuCGG----CCGgCGGU-CCGag -5'
21709 5' -62.7 NC_004812.1 + 155365 0.66 0.620595
Target:  5'- -cGGGCGGccGCgGcGCCGCCcGGGCg- -3'
miRNA:   3'- gcUCCGUCuuCGgC-CGGCGG-UCCGag -5'
21709 5' -62.7 NC_004812.1 + 125316 0.66 0.620595
Target:  5'- gCGAGcGCguguuccgaGGgcGCCGguucguGCCGCCGGGCg- -3'
miRNA:   3'- -GCUC-CG---------UCuuCGGC------CGGCGGUCCGag -5'
21709 5' -62.7 NC_004812.1 + 94123 0.66 0.619608
Target:  5'- gCGGGGCcucgcgcacgucuGGAcGCaGGCCGCCgcgcugGGGUUCg -3'
miRNA:   3'- -GCUCCG-------------UCUuCGgCCGGCGG------UCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 107851 0.66 0.617637
Target:  5'- gGAGGCGGGgcuccgccuccgagGGCgGaGCCGCCAcGCg- -3'
miRNA:   3'- gCUCCGUCU--------------UCGgC-CGGCGGUcCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.