miRNA display CGI


Results 1 - 20 of 523 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21709 5' -62.7 NC_004812.1 + 971 0.68 0.495335
Target:  5'- gGGGGUccuGGggGUCcggGGUCGCCGGGgUCc -3'
miRNA:   3'- gCUCCG---UCuuCGG---CCGGCGGUCCgAG- -5'
21709 5' -62.7 NC_004812.1 + 1124 1.08 0.000815
Target:  5'- gCGAGGCAGAAGCCGGCCGCCAGGCUCc -3'
miRNA:   3'- -GCUCCGUCUUCGGCCGGCGGUCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 1273 0.72 0.295141
Target:  5'- -cGGGCAGAuuCCGGCCcCCAGGgUCc -3'
miRNA:   3'- gcUCCGUCUucGGCCGGcGGUCCgAG- -5'
21709 5' -62.7 NC_004812.1 + 1301 0.68 0.476984
Target:  5'- gGAGGCGGGGcGCCGaCCcCCGGGCc- -3'
miRNA:   3'- gCUCCGUCUU-CGGCcGGcGGUCCGag -5'
21709 5' -62.7 NC_004812.1 + 1431 0.68 0.467936
Target:  5'- gCGGGG-AGggGCCggGGCCgcgaggGCCGGGCa- -3'
miRNA:   3'- -GCUCCgUCuuCGG--CCGG------CGGUCCGag -5'
21709 5' -62.7 NC_004812.1 + 1491 0.69 0.410584
Target:  5'- gCGGcGGCGGAGcGCCGGCCGgCCcgcgccgccgcgcgaGGGCa- -3'
miRNA:   3'- -GCU-CCGUCUU-CGGCCGGC-GG---------------UCCGag -5'
21709 5' -62.7 NC_004812.1 + 2564 0.66 0.571525
Target:  5'- gCGGcGGCAGggGCacgGGCgUGUCGGGCcCg -3'
miRNA:   3'- -GCU-CCGUCuuCGg--CCG-GCGGUCCGaG- -5'
21709 5' -62.7 NC_004812.1 + 2875 0.75 0.176235
Target:  5'- aCGAGGCGGcGGCCGGCgGCgGcGGCg- -3'
miRNA:   3'- -GCUCCGUCuUCGGCCGgCGgU-CCGag -5'
21709 5' -62.7 NC_004812.1 + 3100 0.72 0.282147
Target:  5'- gCGGGGCGGggGagGcGCCGCCGaGCUCc -3'
miRNA:   3'- -GCUCCGUCuuCggC-CGGCGGUcCGAG- -5'
21709 5' -62.7 NC_004812.1 + 3132 0.7 0.351739
Target:  5'- gGAGGguGucG-CGGCCGCCGcGCUCc -3'
miRNA:   3'- gCUCCguCuuCgGCCGGCGGUcCGAG- -5'
21709 5' -62.7 NC_004812.1 + 3220 0.75 0.173682
Target:  5'- cCGAGGCGcGcGGCgGGCCgaaggcgcggccggaGCCGGGCUCg -3'
miRNA:   3'- -GCUCCGU-CuUCGgCCGG---------------CGGUCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 3306 0.7 0.34426
Target:  5'- uCGaAGGCG--AGCgCGGCgCGCCAGGcCUCg -3'
miRNA:   3'- -GC-UCCGUcuUCG-GCCG-GCGGUCC-GAG- -5'
21709 5' -62.7 NC_004812.1 + 3396 0.66 0.620595
Target:  5'- gCGGcGGCGGAGggcGCCGG-CGUguGGCUg -3'
miRNA:   3'- -GCU-CCGUCUU---CGGCCgGCGguCCGAg -5'
21709 5' -62.7 NC_004812.1 + 3531 0.73 0.240237
Target:  5'- gGGGGCGG-GGCCGcGgCGCCGGGC-Cg -3'
miRNA:   3'- gCUCCGUCuUCGGC-CgGCGGUCCGaG- -5'
21709 5' -62.7 NC_004812.1 + 3585 0.66 0.610738
Target:  5'- gCGGcGGCGGcGGGCgGGCgCGCCGGcgaggaGCUCu -3'
miRNA:   3'- -GCU-CCGUC-UUCGgCCG-GCGGUC------CGAG- -5'
21709 5' -62.7 NC_004812.1 + 3904 0.66 0.591076
Target:  5'- gCGGGcGCGGcGGCgCGGCgGCgGGGC-Cg -3'
miRNA:   3'- -GCUC-CGUCuUCG-GCCGgCGgUCCGaG- -5'
21709 5' -62.7 NC_004812.1 + 4127 0.81 0.065846
Target:  5'- gCGGGGCccucgucggAGAGGgCGGCCGCCAGGCg- -3'
miRNA:   3'- -GCUCCG---------UCUUCgGCCGGCGGUCCGag -5'
21709 5' -62.7 NC_004812.1 + 4631 0.7 0.374861
Target:  5'- aGGGGCGGGggGGCgGGaCGCCcgcgcggggagGGGCUCg -3'
miRNA:   3'- gCUCCGUCU--UCGgCCgGCGG-----------UCCGAG- -5'
21709 5' -62.7 NC_004812.1 + 4751 0.72 0.288586
Target:  5'- gGGGGCGGcGGCuCGGCgccggGCCAcGGCUCg -3'
miRNA:   3'- gCUCCGUCuUCG-GCCGg----CGGU-CCGAG- -5'
21709 5' -62.7 NC_004812.1 + 4939 0.73 0.24589
Target:  5'- gGAGGCggcgcuGGAGGgCGGCCGgCGGGCg- -3'
miRNA:   3'- gCUCCG------UCUUCgGCCGGCgGUCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.