miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21710 3' -54.7 NC_004812.1 + 9648 0.66 0.936667
Target:  5'- cGGGGGAAAcucAGcgccaccGGGGAGGGGGAc -3'
miRNA:   3'- -UUUCCUUUcuuUCuc-----CCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 91607 0.66 0.936667
Target:  5'- --cGGAAAu---GGGGGacccGGGGGGGGAg -3'
miRNA:   3'- uuuCCUUUcuuuCUCCC----CCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 39955 0.66 0.931584
Target:  5'- ---cGAGAGAcgGAGAGGcguGGGAcGGGGGu -3'
miRNA:   3'- uuucCUUUCU--UUCUCC---CCCU-CCCCCu -5'
21710 3' -54.7 NC_004812.1 + 59618 0.66 0.926253
Target:  5'- uAGAGGGcguGGggGuGGGGcGGGAgcggccgcGGGGGAu -3'
miRNA:   3'- -UUUCCUu--UCuuU-CUCC-CCCU--------CCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 3316 0.66 0.926253
Target:  5'- aGGAGGAGccaGGGGAGGGGcccGAGGGGc- -3'
miRNA:   3'- -UUUCCUUuc-UUUCUCCCC---CUCCCCcu -5'
21710 3' -54.7 NC_004812.1 + 78963 0.66 0.926253
Target:  5'- cGGGGGucGggGGugcgccGGGGGucGGGGGu -3'
miRNA:   3'- uUUCCUuuCuuUCu-----CCCCCucCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 34217 0.66 0.926253
Target:  5'- aGGAGGAGccaGGGGAGGGGcccGAGGGGc- -3'
miRNA:   3'- -UUUCCUUuc-UUUCUCCCC---CUCCCCcu -5'
21710 3' -54.7 NC_004812.1 + 100120 0.66 0.924605
Target:  5'- cGGGGGAGGGGAGGGGaggcguggcggcgcGGGcGGcGGGGc -3'
miRNA:   3'- uUUCCUUUCUUUCUCC--------------CCCuCC-CCCU- -5'
21710 3' -54.7 NC_004812.1 + 72033 0.66 0.920673
Target:  5'- -uGGGucgcAGGAGGcGGuGGAGGGGGGg -3'
miRNA:   3'- uuUCCuu--UCUUUCuCCcCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 85981 0.66 0.920673
Target:  5'- gGGGGGAAcgcuGGAAAGGGGaGGuGuGGGGuGGg -3'
miRNA:   3'- -UUUCCUU----UCUUUCUCC-CC-CuCCCC-CU- -5'
21710 3' -54.7 NC_004812.1 + 69944 0.66 0.920673
Target:  5'- --cGGAAucGGAGGccGAGGGGGGGucuguggccGGGGGc -3'
miRNA:   3'- uuuCCUU--UCUUU--CUCCCCCUC---------CCCCU- -5'
21710 3' -54.7 NC_004812.1 + 36069 0.66 0.920673
Target:  5'- gAGAGGGGcgggggcuccccAGAAgcAGAGaGGGGcGGGGGc -3'
miRNA:   3'- -UUUCCUU------------UCUU--UCUC-CCCCuCCCCCu -5'
21710 3' -54.7 NC_004812.1 + 5168 0.66 0.920673
Target:  5'- gAGAGGGGcgggggcuccccAGAAgcAGAGaGGGGcGGGGGc -3'
miRNA:   3'- -UUUCCUU------------UCUU--UCUC-CCCCuCCCCCu -5'
21710 3' -54.7 NC_004812.1 + 5684 0.66 0.91895
Target:  5'- cGGGGGGccGggGGucucccagggccacGGGGGGGcGGGGGu -3'
miRNA:   3'- -UUUCCUuuCuuUC--------------UCCCCCU-CCCCCu -5'
21710 3' -54.7 NC_004812.1 + 93999 0.66 0.91895
Target:  5'- uAAGGcgcgcccAGGAAGAGGGGGGGaaacgcggcgcgauGGGGu -3'
miRNA:   3'- uUUCCuu-----UCUUUCUCCCCCUC--------------CCCCu -5'
21710 3' -54.7 NC_004812.1 + 36585 0.66 0.91895
Target:  5'- cGGGGGGccGggGGucucccagggccacGGGGGGGcGGGGGu -3'
miRNA:   3'- -UUUCCUuuCuuUC--------------UCCCCCU-CCCCCu -5'
21710 3' -54.7 NC_004812.1 + 140801 0.66 0.914845
Target:  5'- -cGGGGGAG-GGGAuGGGGAGGcGGAa -3'
miRNA:   3'- uuUCCUUUCuUUCUcCCCCUCCcCCU- -5'
21710 3' -54.7 NC_004812.1 + 122299 0.67 0.908769
Target:  5'- --cGGAGGGccgccGGGGGGAGGcGGGc -3'
miRNA:   3'- uuuCCUUUCuuuc-UCCCCCUCC-CCCu -5'
21710 3' -54.7 NC_004812.1 + 32814 0.67 0.908769
Target:  5'- --cGGAAgccgggcgcGGAcGAGuGGGGGcGGGGGGc -3'
miRNA:   3'- uuuCCUU---------UCU-UUCuCCCCCuCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 153200 0.67 0.908769
Target:  5'- --cGGAGGGccgccGGGGGGAGGcGGGc -3'
miRNA:   3'- uuuCCUUUCuuuc-UCCCCCUCC-CCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.