miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21710 3' -54.7 NC_004812.1 + 150088 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 118520 0.84 0.14923
Target:  5'- aGGAGGGAAGAAAGGGGGcGAGaGGGGAc -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCcCUC-CCCCU- -5'
21710 3' -54.7 NC_004812.1 + 149815 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 149854 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 149893 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 149932 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 149971 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 150010 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 150049 0.83 0.165597
Target:  5'- gGGGGGAAGGGAAGGGGGGaagggaaGGGGGGAa -3'
miRNA:   3'- -UUUCCUUUCUUUCUCCCCc------UCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 156256 0.84 0.145375
Target:  5'- aGGGGGAcGGGAGGGGGacGGGAGGGGGAc -3'
miRNA:   3'- -UUUCCUuUCUUUCUCC--CCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 116334 0.84 0.145375
Target:  5'- gGGGGGggGGGuguAGGGaGGGGGGGGGGAa -3'
miRNA:   3'- -UUUCCuuUCUu--UCUC-CCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 6641 0.87 0.097546
Target:  5'- gAGAGGGGAGggGGuGGGGGAgauGGGGGAg -3'
miRNA:   3'- -UUUCCUUUCuuUCuCCCCCU---CCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 156352 0.98 0.017516
Target:  5'- gGGGGGggGGggGGGGGGGGGGGGGGAg -3'
miRNA:   3'- -UUUCCuuUCuuUCUCCCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 156186 0.97 0.020159
Target:  5'- cGAGGAAGGGGAGGGGGGGAGGGGGc -3'
miRNA:   3'- uUUCCUUUCUUUCUCCCCCUCCCCCu -5'
21710 3' -54.7 NC_004812.1 + 137988 0.95 0.030689
Target:  5'- --cGGggGGggGGGGGGGGGGGGGGAg -3'
miRNA:   3'- uuuCCuuUCuuUCUCCCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 54719 0.91 0.053495
Target:  5'- cGAGGggGGAgGGGAGGGGGAGGGGGc -3'
miRNA:   3'- uUUCCuuUCU-UUCUCCCCCUCCCCCu -5'
21710 3' -54.7 NC_004812.1 + 131596 0.9 0.063104
Target:  5'- gGAAGGAGGGAgGGGAGGGGGAGGGGaGAn -3'
miRNA:   3'- -UUUCCUUUCU-UUCUCCCCCUCCCC-CU- -5'
21710 3' -54.7 NC_004812.1 + 116219 0.89 0.072367
Target:  5'- gGAGGGGcgcgcaaaugGGGggGGGGGGGGGGGGGGAa -3'
miRNA:   3'- -UUUCCU----------UUCuuUCUCCCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 154939 0.88 0.087552
Target:  5'- -cGGGAGgcggacgcGGggGGGGGGGGAGGGGGGa -3'
miRNA:   3'- uuUCCUU--------UCuuUCUCCCCCUCCCCCU- -5'
21710 3' -54.7 NC_004812.1 + 155546 0.87 0.094951
Target:  5'- gGAGGGcgGGAGGGGcGGGGGAGGGGGGa -3'
miRNA:   3'- -UUUCCuuUCUUUCU-CCCCCUCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.