miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21710 5' -60.2 NC_004812.1 + 85381 0.66 0.783819
Target:  5'- cGUCCCCgccgCGCCCUCgcggccgcccgCUCgCCGc -3'
miRNA:   3'- cCAGGGGaaagGCGGGAGa----------GAGgGGC- -5'
21710 5' -60.2 NC_004812.1 + 80397 0.66 0.783819
Target:  5'- --cCCCCUUccgcgcggUCUGCCCaucccuucuuUCcCUCCCCGc -3'
miRNA:   3'- ccaGGGGAA--------AGGCGGG----------AGaGAGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 92436 0.66 0.783819
Target:  5'- cGGcCCCCg--CCGCCCUCcCgcgcggagCCCGc -3'
miRNA:   3'- -CCaGGGGaaaGGCGGGAGaGag------GGGC- -5'
21710 5' -60.2 NC_004812.1 + 150501 0.66 0.783819
Target:  5'- --cCCUCUUUCUuUCCuuUCUCUCCCCu -3'
miRNA:   3'- ccaGGGGAAAGGcGGG--AGAGAGGGGc -5'
21710 5' -60.2 NC_004812.1 + 24992 0.66 0.783819
Target:  5'- --cCCUCUUUCUuUCCuuUCUCUCCCCu -3'
miRNA:   3'- ccaGGGGAAAGGcGGG--AGAGAGGGGc -5'
21710 5' -60.2 NC_004812.1 + 125845 0.66 0.783819
Target:  5'- nGUCCCCcucccgUCC-CCCUCcCgUCCCCc -3'
miRNA:   3'- cCAGGGGaa----AGGcGGGAGaG-AGGGGc -5'
21710 5' -60.2 NC_004812.1 + 79137 0.66 0.783819
Target:  5'- gGGUCCCagccCCGCCUccgCUCgccacgagccCCCCGg -3'
miRNA:   3'- -CCAGGGgaaaGGCGGGa--GAGa---------GGGGC- -5'
21710 5' -60.2 NC_004812.1 + 21868 0.66 0.783819
Target:  5'- -uUCCCCgcggCCaggcGCgCCUCcagCUCCCCGa -3'
miRNA:   3'- ccAGGGGaaa-GG----CG-GGAGa--GAGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 337 0.66 0.783819
Target:  5'- nGUCCCCcucccgUCC-CCCUCcCgUCCCCc -3'
miRNA:   3'- cCAGGGGaa----AGGcGGGAGaG-AGGGGc -5'
21710 5' -60.2 NC_004812.1 + 84450 0.66 0.777598
Target:  5'- gGGUCCgCCUcgcCCGCCucuggguucguucggCUCgcuagagUCUCCCCGc -3'
miRNA:   3'- -CCAGG-GGAaa-GGCGG---------------GAG-------AGAGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 150212 0.66 0.774913
Target:  5'- cGUaCCCCggcgUCGCCCUgaC-CCCCGg -3'
miRNA:   3'- cCA-GGGGaaa-GGCGGGAgaGaGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 112307 0.66 0.774913
Target:  5'- --cUCCCUcUCCGCCCcCg--CCCCGu -3'
miRNA:   3'- ccaGGGGAaAGGCGGGaGagaGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 23389 0.66 0.774913
Target:  5'- cGUCgCCacgaucgCCGCCCUCaaCUUCCCGc -3'
miRNA:   3'- cCAGgGGaaa----GGCGGGAGa-GAGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 119311 0.66 0.774913
Target:  5'- cGUaCCCCggcgUCGCCCUgaC-CCCCGg -3'
miRNA:   3'- cCA-GGGGaaa-GGCGGGAgaGaGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 55700 0.66 0.774913
Target:  5'- cGUCCUCg--CgGCCgUCUCcgcgCCCCGc -3'
miRNA:   3'- cCAGGGGaaaGgCGGgAGAGa---GGGGC- -5'
21710 5' -60.2 NC_004812.1 + 43982 0.66 0.774913
Target:  5'- aGUCCCCgcggUCGCCCgaccggccggC-CUCCUCGg -3'
miRNA:   3'- cCAGGGGaaa-GGCGGGa---------GaGAGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 80668 0.66 0.774913
Target:  5'- aGGcUCCCCUccucCCGCaCCUCcaggUCCCUGg -3'
miRNA:   3'- -CC-AGGGGAaa--GGCG-GGAGag--AGGGGC- -5'
21710 5' -60.2 NC_004812.1 + 41837 0.66 0.773118
Target:  5'- -cUCCCCguacgccUUCGCCCUCguacaggcgcacCUCCCCc -3'
miRNA:   3'- ccAGGGGaa-----AGGCGGGAGa-----------GAGGGGc -5'
21710 5' -60.2 NC_004812.1 + 53103 0.66 0.76589
Target:  5'- cGUCCCCgagcaUCCGCgCg--CUCaCCCGg -3'
miRNA:   3'- cCAGGGGaa---AGGCGgGagaGAG-GGGC- -5'
21710 5' -60.2 NC_004812.1 + 116830 0.66 0.76589
Target:  5'- -aUCCCUccUCCGCCUccuccCUUUCCCCc -3'
miRNA:   3'- ccAGGGGaaAGGCGGGa----GAGAGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.