miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21711 3' -52.2 NC_004812.1 + 71807 0.66 0.989598
Target:  5'- cCGUCGUgGCGUGGggguuggCGgUAGGGGaCGu -3'
miRNA:   3'- -GCAGCAgUGCACUa------GU-AUCCCCaGUg -5'
21711 3' -52.2 NC_004812.1 + 97160 0.66 0.988186
Target:  5'- gGUUGaUCGCcgggGUcGUCGUGGGGGUCGu -3'
miRNA:   3'- gCAGC-AGUG----CAcUAGUAUCCCCAGUg -5'
21711 3' -52.2 NC_004812.1 + 23469 0.66 0.988186
Target:  5'- uCGUCGUCcuccugcugGCgGUGGUCGaGGGGcugcuGUCGCa -3'
miRNA:   3'- -GCAGCAG---------UG-CACUAGUaUCCC-----CAGUG- -5'
21711 3' -52.2 NC_004812.1 + 38782 0.66 0.98663
Target:  5'- gCG-CGUCGCGUcgcGAUCucgaGGGUCGCc -3'
miRNA:   3'- -GCaGCAGUGCA---CUAGuaucCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 13434 0.66 0.98663
Target:  5'- cCGUCGUUucgggggacgcCGUGGUCucgggggugGGGGGUgGCg -3'
miRNA:   3'- -GCAGCAGu----------GCACUAGua-------UCCCCAgUG- -5'
21711 3' -52.2 NC_004812.1 + 7881 0.66 0.98663
Target:  5'- gCG-CGUCGCGUcgcGAUCucgaGGGUCGCc -3'
miRNA:   3'- -GCaGCAGUGCA---CUAGuaucCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 55293 0.66 0.984921
Target:  5'- ---gGUCGCGUGGUCGaagAGGGGg--- -3'
miRNA:   3'- gcagCAGUGCACUAGUa--UCCCCagug -5'
21711 3' -52.2 NC_004812.1 + 55877 0.67 0.978792
Target:  5'- gCGUCGUCAggUGUGGUCGUAGcacgCGCg -3'
miRNA:   3'- -GCAGCAGU--GCACUAGUAUCcccaGUG- -5'
21711 3' -52.2 NC_004812.1 + 29201 0.67 0.976387
Target:  5'- gCGUgCGgugCACGUGugguUUAUuggggggcgggcGGGGGUCGCg -3'
miRNA:   3'- -GCA-GCa--GUGCACu---AGUA------------UCCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 9149 0.67 0.976387
Target:  5'- cCGgagCGUCGCGgcgcgGAcCGUGGGGGaCAUu -3'
miRNA:   3'- -GCa--GCAGUGCa----CUaGUAUCCCCaGUG- -5'
21711 3' -52.2 NC_004812.1 + 154709 0.67 0.976387
Target:  5'- gCGUgCGgugCACGUGugguUUAUuggggggcgggcGGGGGUCGCg -3'
miRNA:   3'- -GCA-GCa--GUGCACu---AGUA------------UCCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 32596 0.68 0.967978
Target:  5'- cCGUCGUgUACG-GGUCGUAggcgccgcGGGcGUCGCa -3'
miRNA:   3'- -GCAGCA-GUGCaCUAGUAU--------CCC-CAGUG- -5'
21711 3' -52.2 NC_004812.1 + 132644 0.68 0.964753
Target:  5'- gCGUaCGUCACGUccUC---GGGGUCGCu -3'
miRNA:   3'- -GCA-GCAGUGCAcuAGuauCCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 107793 0.68 0.961308
Target:  5'- gCGUCGUCgaGCGUGAUgGgGGcGGGUaGCa -3'
miRNA:   3'- -GCAGCAG--UGCACUAgUaUC-CCCAgUG- -5'
21711 3' -52.2 NC_004812.1 + 145156 0.68 0.960231
Target:  5'- gCGUCGUguacgucaacgggCACGUGcacgccuGGGGUCACg -3'
miRNA:   3'- -GCAGCA-------------GUGCACuaguau-CCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 134578 0.68 0.957636
Target:  5'- --aCGUcCACGUGGUCGUcGGGGagUACg -3'
miRNA:   3'- gcaGCA-GUGCACUAGUAuCCCCa-GUG- -5'
21711 3' -52.2 NC_004812.1 + 10914 0.69 0.940597
Target:  5'- cCGgUGUgGCG-GAUCGggggacgAGGGGUCGCg -3'
miRNA:   3'- -GCaGCAgUGCaCUAGUa------UCCCCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 32067 0.69 0.940121
Target:  5'- gCGUCGUCGCG-GGgccCGUGGGgcccggccccggaGGUCGCc -3'
miRNA:   3'- -GCAGCAGUGCaCUa--GUAUCC-------------CCAGUG- -5'
21711 3' -52.2 NC_004812.1 + 41528 0.7 0.919661
Target:  5'- --aCGccCACGUGAUCcUGGGGGUCcuGCu -3'
miRNA:   3'- gcaGCa-GUGCACUAGuAUCCCCAG--UG- -5'
21711 3' -52.2 NC_004812.1 + 35478 0.71 0.887981
Target:  5'- gCGUCGgcgCGCGaGAUCcccgAGGGGaUCGCg -3'
miRNA:   3'- -GCAGCa--GUGCaCUAGua--UCCCC-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.