miRNA display CGI


Results 1 - 20 of 644 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21712 3' -56.7 NC_004812.1 + 12141 0.65 0.928046
Target:  5'- cGCGCgGCGCCGGGCccgcucaauacacaAUGAGCacGUcCGGGu -3'
miRNA:   3'- -CGUG-CGCGGUCUG--------------UGCUUGc-CA-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 95494 0.66 0.926496
Target:  5'- cGCGgGCGCCGGcgcgcCGCGGGgcgccgccucgacccCGG-CGGGg -3'
miRNA:   3'- -CGUgCGCGGUCu----GUGCUU---------------GCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 108751 0.66 0.924398
Target:  5'- uGCAgGCGCUGcGGCugGGG-GGcgCGGGg -3'
miRNA:   3'- -CGUgCGCGGU-CUGugCUUgCCa-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 85695 0.66 0.924398
Target:  5'- cGCugGCgGCCAGACcu--GCGGgggCGGc -3'
miRNA:   3'- -CGugCG-CGGUCUGugcuUGCCa--GCCc -5'
21712 3' -56.7 NC_004812.1 + 64323 0.66 0.924398
Target:  5'- aGCACGCugucGCuCAG-CGCGGACGccguggCGGGc -3'
miRNA:   3'- -CGUGCG----CG-GUCuGUGCUUGCca----GCCC- -5'
21712 3' -56.7 NC_004812.1 + 28726 0.66 0.924398
Target:  5'- cCugGCGCUGGAcCGCGAcgccgcGCGcGcCGGGc -3'
miRNA:   3'- cGugCGCGGUCU-GUGCU------UGC-CaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 26372 0.66 0.924398
Target:  5'- gGCGaGCGgCAGGC-UGuuUGGUCGGGc -3'
miRNA:   3'- -CGUgCGCgGUCUGuGCuuGCCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 56915 0.66 0.924398
Target:  5'- cGCAgGCGCCGccgcacGGCGCGGACcuGGa-GGGc -3'
miRNA:   3'- -CGUgCGCGGU------CUGUGCUUG--CCagCCC- -5'
21712 3' -56.7 NC_004812.1 + 86609 0.66 0.924398
Target:  5'- -uGCGgGCCGcGGCgcgguugcccaGCGggUGGUCGuGGg -3'
miRNA:   3'- cgUGCgCGGU-CUG-----------UGCuuGCCAGC-CC- -5'
21712 3' -56.7 NC_004812.1 + 155579 0.66 0.924398
Target:  5'- cGCGCGCgggcgGCCGGGCccucGCGGGggcgcggcccCGGcCGGGc -3'
miRNA:   3'- -CGUGCG-----CGGUCUG----UGCUU----------GCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 72379 0.66 0.924398
Target:  5'- cGCGuuCGUGacaCAGACGcCGuuuGCGGUCGGcGg -3'
miRNA:   3'- -CGU--GCGCg--GUCUGU-GCu--UGCCAGCC-C- -5'
21712 3' -56.7 NC_004812.1 + 58404 0.66 0.924398
Target:  5'- gGC-CGcCGCCuggAGGCugGGgggGCGG-CGGGa -3'
miRNA:   3'- -CGuGC-GCGG---UCUGugCU---UGCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 144776 0.66 0.924398
Target:  5'- -uGgGCGCCAGcgGCugGAGCGuuggUGGGa -3'
miRNA:   3'- cgUgCGCGGUC--UGugCUUGCca--GCCC- -5'
21712 3' -56.7 NC_004812.1 + 5576 0.66 0.924398
Target:  5'- cGCGCcCGCCcaccaGGGcCACGGGgGGggCGGGg -3'
miRNA:   3'- -CGUGcGCGG-----UCU-GUGCUUgCCa-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 30854 0.66 0.924398
Target:  5'- gGCGCGC-CCGGcCAUGGGgGGcCGaGGg -3'
miRNA:   3'- -CGUGCGcGGUCuGUGCUUgCCaGC-CC- -5'
21712 3' -56.7 NC_004812.1 + 25220 0.66 0.924398
Target:  5'- aCGCGUGCUcgcuCACGAGCGccuccUCGGGg -3'
miRNA:   3'- cGUGCGCGGucu-GUGCUUGCc----AGCCC- -5'
21712 3' -56.7 NC_004812.1 + 114304 0.66 0.924398
Target:  5'- ---aGCGCCAuggcGGCGCccagGAACGGacgCGGGg -3'
miRNA:   3'- cgugCGCGGU----CUGUG----CUUGCCa--GCCC- -5'
21712 3' -56.7 NC_004812.1 + 59555 0.66 0.924398
Target:  5'- aGCGCGaccauCGCUGGGC-CucGCgGGUCGGGg -3'
miRNA:   3'- -CGUGC-----GCGGUCUGuGcuUG-CCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 36477 0.66 0.924398
Target:  5'- cGCGCcCGCCcaccaGGGcCACGGGgGGggCGGGg -3'
miRNA:   3'- -CGUGcGCGG-----UCU-GUGCUUgCCa-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 137597 0.66 0.924398
Target:  5'- cGCGCuGCGCCGGccCGCGGccGCGGgccucCGGc -3'
miRNA:   3'- -CGUG-CGCGGUCu-GUGCU--UGCCa----GCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.