miRNA display CGI


Results 1 - 20 of 644 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21712 3' -56.7 NC_004812.1 + 134351 0.77 0.373958
Target:  5'- cGCGCGCcCCGGGCccggaACGAGCGGU-GGGa -3'
miRNA:   3'- -CGUGCGcGGUCUG-----UGCUUGCCAgCCC- -5'
21712 3' -56.7 NC_004812.1 + 7618 0.79 0.300344
Target:  5'- aGguCGCGCCggAGACGCGcGGCGGcCGGGg -3'
miRNA:   3'- -CguGCGCGG--UCUGUGC-UUGCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 128069 0.78 0.307175
Target:  5'- cGCGCgGCGgCAGggGCACGGGCGuGUCGGGc -3'
miRNA:   3'- -CGUG-CGCgGUC--UGUGCUUGC-CAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 121901 0.78 0.314124
Target:  5'- gGC-CGCagGCCGGGCGCGGGCcugaGGUCGGGc -3'
miRNA:   3'- -CGuGCG--CGGUCUGUGCUUG----CCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 32811 0.78 0.321191
Target:  5'- aCGCGgaaGCCGGGCGCGGACGaGUgGGGg -3'
miRNA:   3'- cGUGCg--CGGUCUGUGCUUGC-CAgCCC- -5'
21712 3' -56.7 NC_004812.1 + 103737 0.77 0.348368
Target:  5'- -gGCGCGCUcccguGGGCGCGGaugucuauggggccGCGGUCGGGc -3'
miRNA:   3'- cgUGCGCGG-----UCUGUGCU--------------UGCCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 7930 0.77 0.357527
Target:  5'- gGCGCGCGCCGG-CGCGGccgggggGCGcGUcCGGGg -3'
miRNA:   3'- -CGUGCGCGGUCuGUGCU-------UGC-CA-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 98703 0.77 0.358298
Target:  5'- cGC-CGCGCCGGGgGCG-GCGGcgCGGGg -3'
miRNA:   3'- -CGuGCGCGGUCUgUGCuUGCCa-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 127830 0.77 0.365288
Target:  5'- gGCGCGCGCgCAGaaggcgcgcaGCGCGGGCGGcagggcgUCGGGc -3'
miRNA:   3'- -CGUGCGCG-GUC----------UGUGCUUGCC-------AGCCC- -5'
21712 3' -56.7 NC_004812.1 + 66751 0.79 0.296302
Target:  5'- aGCAgCGCGCCGGccucgcGCACGAAUguggcgagcgccgugGGUCGGGg -3'
miRNA:   3'- -CGU-GCGCGGUC------UGUGCUUG---------------CCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 8219 0.79 0.293631
Target:  5'- gGCcCGCGUCGGACGCGcccGGCGGcCGGGc -3'
miRNA:   3'- -CGuGCGCGGUCUGUGC---UUGCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 128588 0.8 0.255806
Target:  5'- cGCGCGCGUCGGuccAgGCGGGCGGggCGGGg -3'
miRNA:   3'- -CGUGCGCGGUC---UgUGCUUGCCa-GCCC- -5'
21712 3' -56.7 NC_004812.1 + 74914 0.85 0.1292
Target:  5'- gGCGCGCGUgCAGGCgcGCGAGCgGGUCGGGg -3'
miRNA:   3'- -CGUGCGCG-GUCUG--UGCUUG-CCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 127467 0.84 0.139344
Target:  5'- cGCGCGCGCCGGGCGcCGGGgGGagGGGg -3'
miRNA:   3'- -CGUGCGCGGUCUGU-GCUUgCCagCCC- -5'
21712 3' -56.7 NC_004812.1 + 145119 0.84 0.146507
Target:  5'- cGCgACGCGUCGGAgGCGAGCGG-CGGGc -3'
miRNA:   3'- -CG-UGCGCGGUCUgUGCUUGCCaGCCC- -5'
21712 3' -56.7 NC_004812.1 + 128825 0.81 0.216828
Target:  5'- cGCgGCGCGCCAGGCcucggggaagaGCGggUGGUCGGu -3'
miRNA:   3'- -CG-UGCGCGGUCUG-----------UGCuuGCCAGCCc -5'
21712 3' -56.7 NC_004812.1 + 101889 0.81 0.2258
Target:  5'- -gGCGCGCCGGGCuagggcgccccgagGCGcGGCGGUCGGGc -3'
miRNA:   3'- cgUGCGCGGUCUG--------------UGC-UUGCCAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 19079 0.8 0.232872
Target:  5'- gGCcCGCGCCGGGC-CGAGCGcUCGGGc -3'
miRNA:   3'- -CGuGCGCGGUCUGuGCUUGCcAGCCC- -5'
21712 3' -56.7 NC_004812.1 + 71206 0.8 0.244115
Target:  5'- gGC-CGCGCCAGGCgGCGAGCGGgCGGc -3'
miRNA:   3'- -CGuGCGCGGUCUG-UGCUUGCCaGCCc -5'
21712 3' -56.7 NC_004812.1 + 74353 0.8 0.249904
Target:  5'- aGCAgGgGCgCGGGCGCGGGCGG-CGGGg -3'
miRNA:   3'- -CGUgCgCG-GUCUGUGCUUGCCaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.