miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21712 5' -53.9 NC_004812.1 + 59600 0.66 0.9663
Target:  5'- --gGGGGCgCGGGCGgcGCUCGCgAACCg -3'
miRNA:   3'- gugUUCUG-GUCUGUa-CGGGCGgUUGG- -5'
21712 5' -53.9 NC_004812.1 + 67345 0.66 0.9663
Target:  5'- aCGCAgcuGGugCAGACgAUGuugucgucCCCGCCGaagACCc -3'
miRNA:   3'- -GUGU---UCugGUCUG-UAC--------GGGCGGU---UGG- -5'
21712 5' -53.9 NC_004812.1 + 3984 0.66 0.9663
Target:  5'- gCGCGccGGCCGGGCAccUGCUcuCGCC-GCCg -3'
miRNA:   3'- -GUGUu-CUGGUCUGU--ACGG--GCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 105963 0.66 0.9663
Target:  5'- gGCGAGucGCCGGGCcccGCCCcCCAcaGCCc -3'
miRNA:   3'- gUGUUC--UGGUCUGua-CGGGcGGU--UGG- -5'
21712 5' -53.9 NC_004812.1 + 49578 0.66 0.9663
Target:  5'- aGCAGGGCCugGGGC-UGCUgGCgCAGCa -3'
miRNA:   3'- gUGUUCUGG--UCUGuACGGgCG-GUUGg -5'
21712 5' -53.9 NC_004812.1 + 67455 0.66 0.9663
Target:  5'- aGCAGGAUCAGgucgGCGUGUCC-CCAcgcguCCg -3'
miRNA:   3'- gUGUUCUGGUC----UGUACGGGcGGUu----GG- -5'
21712 5' -53.9 NC_004812.1 + 104511 0.66 0.9663
Target:  5'- cCGCGGGACgGGcggucgucGCGcGCCCGCgAACg -3'
miRNA:   3'- -GUGUUCUGgUC--------UGUaCGGGCGgUUGg -5'
21712 5' -53.9 NC_004812.1 + 100683 0.66 0.9663
Target:  5'- --gGGGGCCAGGCcacCUCGCCAgaggACCa -3'
miRNA:   3'- gugUUCUGGUCUGuacGGGCGGU----UGG- -5'
21712 5' -53.9 NC_004812.1 + 103074 0.66 0.9663
Target:  5'- gCGCGAGGCCcGAgA-GgCCGUgGACCg -3'
miRNA:   3'- -GUGUUCUGGuCUgUaCgGGCGgUUGG- -5'
21712 5' -53.9 NC_004812.1 + 70109 0.66 0.9663
Target:  5'- aGCAGGgaggcGCCGGGCGcguggcugcgGCCCGCguuCGGCCu -3'
miRNA:   3'- gUGUUC-----UGGUCUGUa---------CGGGCG---GUUGG- -5'
21712 5' -53.9 NC_004812.1 + 43422 0.66 0.9663
Target:  5'- cCACGAG-CgCGGACAUuauCUCGCCGGCg -3'
miRNA:   3'- -GUGUUCuG-GUCUGUAc--GGGCGGUUGg -5'
21712 5' -53.9 NC_004812.1 + 120674 0.66 0.9663
Target:  5'- ----uGACCGcGGCGcUGcCCCGCCuGCCg -3'
miRNA:   3'- guguuCUGGU-CUGU-AC-GGGCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 109938 0.66 0.9663
Target:  5'- uCAUAucGGAgCGGAgcUGCCCcCCGGCCa -3'
miRNA:   3'- -GUGU--UCUgGUCUguACGGGcGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 57368 0.66 0.9663
Target:  5'- --aAAGACgAGACc-GCCCGCUucACCu -3'
miRNA:   3'- gugUUCUGgUCUGuaCGGGCGGu-UGG- -5'
21712 5' -53.9 NC_004812.1 + 131409 0.66 0.9663
Target:  5'- aCGCGuccuGGgCGGACGUGCgCGCgGGCg -3'
miRNA:   3'- -GUGUu---CUgGUCUGUACGgGCGgUUGg -5'
21712 5' -53.9 NC_004812.1 + 51545 0.66 0.9663
Target:  5'- cCGgGGGGCCAGugugcGCCCG-CGGCCg -3'
miRNA:   3'- -GUgUUCUGGUCugua-CGGGCgGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 31009 0.66 0.9663
Target:  5'- gGgAAGACCacgaGGGCGUGCa-GCCGGCg -3'
miRNA:   3'- gUgUUCUGG----UCUGUACGggCGGUUGg -5'
21712 5' -53.9 NC_004812.1 + 80360 0.66 0.9663
Target:  5'- gCACAgccGGGCCcguGugGUGUuuCCGCCGcCCg -3'
miRNA:   3'- -GUGU---UCUGGu--CugUACG--GGCGGUuGG- -5'
21712 5' -53.9 NC_004812.1 + 22548 0.66 0.9663
Target:  5'- -uCGGGAaacGACAccgGCCCGUCGGCCu -3'
miRNA:   3'- guGUUCUgguCUGUa--CGGGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 79053 0.66 0.9663
Target:  5'- cCGC---GCCGGuCGUGCCCGUgGugCa -3'
miRNA:   3'- -GUGuucUGGUCuGUACGGGCGgUugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.