miRNA display CGI


Results 1 - 20 of 471 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21712 5' -53.9 NC_004812.1 + 111 0.76 0.502621
Target:  5'- gCGCGGGGCCGGGa--GCCCGCCcgggAGCCc -3'
miRNA:   3'- -GUGUUCUGGUCUguaCGGGCGG----UUGG- -5'
21712 5' -53.9 NC_004812.1 + 967 0.71 0.775964
Target:  5'- cUAgGGGAgCCcGGCGUGCCCGCCc-CCg -3'
miRNA:   3'- -GUgUUCU-GGuCUGUACGGGCGGuuGG- -5'
21712 5' -53.9 NC_004812.1 + 1355 0.69 0.854613
Target:  5'- cCGgAAGGCCGGcUAUGCaaaCGCCGugCg -3'
miRNA:   3'- -GUgUUCUGGUCuGUACGg--GCGGUugG- -5'
21712 5' -53.9 NC_004812.1 + 1448 0.69 0.884527
Target:  5'- cCGCgAGGGCCGGGCAcgGCggcgaCGCCGGCg -3'
miRNA:   3'- -GUG-UUCUGGUCUGUa-CGg----GCGGUUGg -5'
21712 5' -53.9 NC_004812.1 + 2210 0.68 0.916737
Target:  5'- cUugGAGccCCGGcCcgGCCCGCC-GCCg -3'
miRNA:   3'- -GugUUCu-GGUCuGuaCGGGCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 2606 0.67 0.942864
Target:  5'- gACGGcACCGGACucuCCgCGCCGGCCc -3'
miRNA:   3'- gUGUUcUGGUCUGuacGG-GCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 2800 0.71 0.789067
Target:  5'- gGCAgguAGACguGGCGgcgcgcgacggcggGCCCGUCGGCCg -3'
miRNA:   3'- gUGU---UCUGguCUGUa-------------CGGGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 3099 0.66 0.962967
Target:  5'- gGCGGGGCgGGGgAgGCgCCGCCGAgCu -3'
miRNA:   3'- gUGUUCUGgUCUgUaCG-GGCGGUUgG- -5'
21712 5' -53.9 NC_004812.1 + 3511 0.76 0.473617
Target:  5'- gGCGGcGcCCAGACA-GCCCGCCcACCa -3'
miRNA:   3'- gUGUU-CuGGUCUGUaCGGGCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 3923 0.69 0.853821
Target:  5'- gGCGGGGCCGcgcGGCGgcgGCacggcgcgcgcggCCGCCAGCCc -3'
miRNA:   3'- gUGUUCUGGU---CUGUa--CG-------------GGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 3984 0.66 0.9663
Target:  5'- gCGCGccGGCCGGGCAccUGCUcuCGCC-GCCg -3'
miRNA:   3'- -GUGUu-CUGGUCUGU--ACGG--GCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 4282 0.75 0.562736
Target:  5'- aACAAGACCgucacgggGGAC-UGCCUGCCGGuCCu -3'
miRNA:   3'- gUGUUCUGG--------UCUGuACGGGCGGUU-GG- -5'
21712 5' -53.9 NC_004812.1 + 4554 0.72 0.707084
Target:  5'- cCACAgucuGGACUcgcgccacccuuGGACccccggGCCCGCCGACCc -3'
miRNA:   3'- -GUGU----UCUGG------------UCUGua----CGGGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 4642 0.69 0.845789
Target:  5'- gGCGGGACgcccgcgCGGGgAgggGCUCGCCGGCCg -3'
miRNA:   3'- gUGUUCUG-------GUCUgUa--CGGGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 4716 0.74 0.593543
Target:  5'- gCGCgAGGACgGGGCguGUGCCCGCUcGCCc -3'
miRNA:   3'- -GUG-UUCUGgUCUG--UACGGGCGGuUGG- -5'
21712 5' -53.9 NC_004812.1 + 4850 0.66 0.962967
Target:  5'- uGCGGGGCCGGGgAggggccgcgGCCCGCgCGAg- -3'
miRNA:   3'- gUGUUCUGGUCUgUa--------CGGGCG-GUUgg -5'
21712 5' -53.9 NC_004812.1 + 4888 0.69 0.877381
Target:  5'- aACGAGGCCucacucccGGuGCGUGUgCGCCAGCg -3'
miRNA:   3'- gUGUUCUGG--------UC-UGUACGgGCGGUUGg -5'
21712 5' -53.9 NC_004812.1 + 5394 0.72 0.696905
Target:  5'- gCGCGGGGCCGGGg--GCgUCGCCGGCCc -3'
miRNA:   3'- -GUGUUCUGGUCUguaCG-GGCGGUUGG- -5'
21712 5' -53.9 NC_004812.1 + 5513 0.66 0.947357
Target:  5'- cCGCGGGGa-AGGCGUcCCCGCCGuCCu -3'
miRNA:   3'- -GUGUUCUggUCUGUAcGGGCGGUuGG- -5'
21712 5' -53.9 NC_004812.1 + 6850 0.66 0.955627
Target:  5'- uCGCGGucGGCgAGGCG-GCCCGCCGGg- -3'
miRNA:   3'- -GUGUU--CUGgUCUGUaCGGGCGGUUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.