miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21713 3' -58.5 NC_004812.1 + 16879 0.66 0.81459
Target:  5'- cCUG-GUCGGcguGGCCGAGGCCaucaGCCa- -3'
miRNA:   3'- -GACuCGGCCu--UUGGCUCCGGc---UGGag -5'
21713 3' -58.5 NC_004812.1 + 49246 0.66 0.81459
Target:  5'- -cGcGCgGGggGcguCCGGGGCCGACUcCg -3'
miRNA:   3'- gaCuCGgCCuuU---GGCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 100073 0.66 0.813737
Target:  5'- -gGAGUgugauCGGggGCCG-GGCCGccggagcGCCUUa -3'
miRNA:   3'- gaCUCG-----GCCuuUGGCuCCGGC-------UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 127959 0.66 0.812026
Target:  5'- -cGAGUgcgccucgccgcggCGGAAGuCCGGGGCgccggcggcggCGGCCUCg -3'
miRNA:   3'- gaCUCG--------------GCCUUU-GGCUCCG-----------GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 2451 0.66 0.812026
Target:  5'- -cGAGUgcgccucgccgcggCGGAAGuCCGGGGCgccggcggcggCGGCCUCg -3'
miRNA:   3'- gaCUCG--------------GCCUUU-GGCUCCG-----------GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 3058 0.66 0.805986
Target:  5'- -cGAGCaGGAAGgaGAGGCCG-CCg- -3'
miRNA:   3'- gaCUCGgCCUUUggCUCCGGCuGGag -5'
21713 3' -58.5 NC_004812.1 + 134688 0.66 0.805986
Target:  5'- -gGGGgCGGAGccGCCGAGccGCCGGCUg- -3'
miRNA:   3'- gaCUCgGCCUU--UGGCUC--CGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 27398 0.66 0.805986
Target:  5'- ---cGCCGGcgccGCCGccGCCGACCUg -3'
miRNA:   3'- gacuCGGCCuu--UGGCucCGGCUGGAg -5'
21713 3' -58.5 NC_004812.1 + 29982 0.66 0.805986
Target:  5'- ---uGCCGGAGGCUGccGUCGcCCUCg -3'
miRNA:   3'- gacuCGGCCUUUGGCucCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 152906 0.66 0.805986
Target:  5'- ---cGCCGGcgccGCCGccGCCGACCUg -3'
miRNA:   3'- gacuCGGCCuu--UGGCucCGGCUGGAg -5'
21713 3' -58.5 NC_004812.1 + 128567 0.66 0.805986
Target:  5'- -cGAGCaGGAAGgaGAGGCCG-CCg- -3'
miRNA:   3'- gaCUCGgCCUUUggCUCCGGCuGGag -5'
21713 3' -58.5 NC_004812.1 + 22315 0.66 0.805986
Target:  5'- -gGGGCCucGgcGCCGGGGCUgGACCUg -3'
miRNA:   3'- gaCUCGGc-CuuUGGCUCCGG-CUGGAg -5'
21713 3' -58.5 NC_004812.1 + 123124 0.66 0.805986
Target:  5'- -cGAGUCGGccAGGaaGAGGUCGGCCg- -3'
miRNA:   3'- gaCUCGGCC--UUUggCUCCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 124190 0.66 0.805117
Target:  5'- gCUGGGCgCGGccGcgcccgcggcggcGACCGAGGCCGcggcgcACCUg -3'
miRNA:   3'- -GACUCG-GCC--U-------------UUGGCUCCGGC------UGGAg -5'
21713 3' -58.5 NC_004812.1 + 82332 0.66 0.803375
Target:  5'- aUGAGCCGGAcccgcggacggugcGcgGCCGGGGCgaggCGuACCUg -3'
miRNA:   3'- gACUCGGCCU--------------U--UGGCUCCG----GC-UGGAg -5'
21713 3' -58.5 NC_004812.1 + 59526 0.66 0.80075
Target:  5'- -gGGGgCGGuAGCCGAGGCgcucgggacccagcgCGACCaUCg -3'
miRNA:   3'- gaCUCgGCCuUUGGCUCCG---------------GCUGG-AG- -5'
21713 3' -58.5 NC_004812.1 + 117630 0.66 0.79723
Target:  5'- cCUGaAGCUGGccgacACgGAGGCCGACgUg -3'
miRNA:   3'- -GAC-UCGGCCuu---UGgCUCCGGCUGgAg -5'
21713 3' -58.5 NC_004812.1 + 57414 0.66 0.79723
Target:  5'- cCUGGaCCGGggGCCG-GGCgGcACCa- -3'
miRNA:   3'- -GACUcGGCCuuUGGCuCCGgC-UGGag -5'
21713 3' -58.5 NC_004812.1 + 82995 0.66 0.79723
Target:  5'- gUGGGagaCGGgcGCCGGGG-CGAuCCUCu -3'
miRNA:   3'- gACUCg--GCCuuUGGCUCCgGCU-GGAG- -5'
21713 3' -58.5 NC_004812.1 + 129016 0.66 0.79723
Target:  5'- -cGGGuCCGGggGCuacggCGAGGUgGAgCUCa -3'
miRNA:   3'- gaCUC-GGCCuuUG-----GCUCCGgCUgGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.