miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 84206 0.66 0.628198
Target:  5'- -cCCU-CGGaUGCUCaCGUgGAUCCGCGg -3'
miRNA:   3'- gaGGAgGCC-GCGAG-GCGgCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 106896 0.66 0.628198
Target:  5'- -gCCgUCCGGCGUcuacgCCGCCGAcagguaCUGCGg -3'
miRNA:   3'- gaGG-AGGCCGCGa----GGCGGCUa-----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 47189 0.66 0.628198
Target:  5'- -gCCUCgGGgGC-CCGCCGGgccacCCGUg -3'
miRNA:   3'- gaGGAGgCCgCGaGGCGGCUa----GGCGu -5'
21714 5' -62.8 NC_004812.1 + 80844 0.66 0.628198
Target:  5'- -gCgUUCGGCGCcgCCGCCGAgaCGUAc -3'
miRNA:   3'- gaGgAGGCCGCGa-GGCGGCUagGCGU- -5'
21714 5' -62.8 NC_004812.1 + 82675 0.66 0.628198
Target:  5'- gCUCUUCgGGCGCUUCGUgCGccaCCGCc -3'
miRNA:   3'- -GAGGAGgCCGCGAGGCG-GCua-GGCGu -5'
21714 5' -62.8 NC_004812.1 + 5067 0.66 0.628198
Target:  5'- -gCCcCCGGCcccgGCcCCGCCGucgccGUCCGCGu -3'
miRNA:   3'- gaGGaGGCCG----CGaGGCGGC-----UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 130576 0.66 0.628198
Target:  5'- -gCCcCCGGCcccgGCcCCGCCGucgccGUCCGCGu -3'
miRNA:   3'- gaGGaGGCCG----CGaGGCGGC-----UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 18572 0.66 0.628198
Target:  5'- gCUCCgCCGcCGCcgCCGCCGcacCCGCGc -3'
miRNA:   3'- -GAGGaGGCcGCGa-GGCGGCua-GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 96534 0.66 0.628198
Target:  5'- gCUCgC-CCGcguGCGCUCCGCCcugCCGCu -3'
miRNA:   3'- -GAG-GaGGC---CGCGAGGCGGcuaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 48354 0.66 0.628198
Target:  5'- -gCCgCCGaGgGCUCCGCCGcggacgCCGCc -3'
miRNA:   3'- gaGGaGGC-CgCGAGGCGGCua----GGCGu -5'
21714 5' -62.8 NC_004812.1 + 74782 0.66 0.628198
Target:  5'- -gCCUCCGGCGaCUuccacgcgcccCCGCgGGcCCGCc -3'
miRNA:   3'- gaGGAGGCCGC-GA-----------GGCGgCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 32095 0.66 0.627225
Target:  5'- --aCUCCGGUauauguaGCUCgGCCGGgggcggcgCCGCGg -3'
miRNA:   3'- gagGAGGCCG-------CGAGgCGGCUa-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1194 0.66 0.627225
Target:  5'- --aCUCCGGUauauguaGCUCgGCCGGgggcggcgCCGCGg -3'
miRNA:   3'- gagGAGGCCG-------CGAGgCGGCUa-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 75422 0.66 0.619441
Target:  5'- -gCCggUCCGGaccaGCUCCGCCGcggcggccgggucgCCGCGg -3'
miRNA:   3'- gaGG--AGGCCg---CGAGGCGGCua------------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 88426 0.66 0.618468
Target:  5'- -gCgUCCGGCGCgcccCCGCCcgcggCCGCc -3'
miRNA:   3'- gaGgAGGCCGCGa---GGCGGcua--GGCGu -5'
21714 5' -62.8 NC_004812.1 + 135516 0.66 0.618468
Target:  5'- gCUCUgUCGGCGuCUUCGCCGccucggccgCCGCGg -3'
miRNA:   3'- -GAGGaGGCCGC-GAGGCGGCua-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 83362 0.66 0.618468
Target:  5'- gUCCgcgCCGGCcccaggGCggCGgCGGUCCGCAg -3'
miRNA:   3'- gAGGa--GGCCG------CGagGCgGCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 134781 0.66 0.618468
Target:  5'- uCUCCUCgaCGGUcucCUUCGCCGAgaucgCCGCc -3'
miRNA:   3'- -GAGGAG--GCCGc--GAGGCGGCUa----GGCGu -5'
21714 5' -62.8 NC_004812.1 + 31595 0.66 0.618468
Target:  5'- gUCCccgggUCCGGaGCUCCGUCGGcgUCgGCGc -3'
miRNA:   3'- gAGG-----AGGCCgCGAGGCGGCU--AGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 126789 0.66 0.618468
Target:  5'- -gCCUCUGcGCGCUCuCGUCGua-CGCGa -3'
miRNA:   3'- gaGGAGGC-CGCGAG-GCGGCuagGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.