miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 3' -55.9 NC_004812.1 + 52214 0.66 0.926381
Target:  5'- cGUgUCCUCGcCGUCUGUuucgcccucggUGGGGg- -3'
miRNA:   3'- -CAgAGGAGCaGCAGACAca---------ACCCCgg -5'
21715 3' -55.9 NC_004812.1 + 153762 0.66 0.916453
Target:  5'- --gUCCUCGgCGUCgcgccgcGUGcgGGGGUCg -3'
miRNA:   3'- cagAGGAGCaGCAGa------CACaaCCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 122861 0.66 0.916453
Target:  5'- --gUCCUCGgCGUCgcgccgcGUGcgGGGGUCg -3'
miRNA:   3'- cagAGGAGCaGCAGa------CACaaCCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 102162 0.66 0.910609
Target:  5'- cGUCggCCcCGUCGUCg-----GGGGCCc -3'
miRNA:   3'- -CAGa-GGaGCAGCAGacacaaCCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 32062 0.67 0.898225
Target:  5'- -cCUCggCGUCGUCgcgGggcccgUGGGGCCc -3'
miRNA:   3'- caGAGgaGCAGCAGa--Caca---ACCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 90412 0.67 0.891689
Target:  5'- gGUUgUCUUGUCGUCUGUGc--GGGCg -3'
miRNA:   3'- -CAGaGGAGCAGCAGACACaacCCCGg -5'
21715 3' -55.9 NC_004812.1 + 140329 0.67 0.891689
Target:  5'- gGUCUCUucuguUCGUCGUCggcGcGUgGGuGGCCg -3'
miRNA:   3'- -CAGAGG-----AGCAGCAGa--CaCAaCC-CCGG- -5'
21715 3' -55.9 NC_004812.1 + 57861 0.68 0.854187
Target:  5'- -cCUCCU-GUCGUCgccgccgGGGGCCu -3'
miRNA:   3'- caGAGGAgCAGCAGacacaa-CCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 104661 0.68 0.847921
Target:  5'- -gCUCCUCGUCGUUgcg---GGGGUg -3'
miRNA:   3'- caGAGGAGCAGCAGacacaaCCCCGg -5'
21715 3' -55.9 NC_004812.1 + 105284 0.68 0.831726
Target:  5'- cGUCggCCUCuacuUCGUCgGUGccgUGGGGCUu -3'
miRNA:   3'- -CAGa-GGAGc---AGCAGaCACa--ACCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 138109 0.69 0.814815
Target:  5'- -gCUCCUCGcggcggUCGUCUGccUGUgucuGGGCCc -3'
miRNA:   3'- caGAGGAGC------AGCAGAC--ACAac--CCCGG- -5'
21715 3' -55.9 NC_004812.1 + 10355 0.69 0.814815
Target:  5'- cGUCUCgUCGUCGcUCUccGUGUaguacgccucgGGGGUCu -3'
miRNA:   3'- -CAGAGgAGCAGC-AGA--CACAa----------CCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 107785 0.69 0.797251
Target:  5'- -aCUCCagggCGUCGUCgagcGUGaUGGGGgCg -3'
miRNA:   3'- caGAGGa---GCAGCAGa---CACaACCCCgG- -5'
21715 3' -55.9 NC_004812.1 + 48686 0.69 0.779099
Target:  5'- -cCUCCUCGgggCGcUCUGUGgcugGGGGaCg -3'
miRNA:   3'- caGAGGAGCa--GC-AGACACaa--CCCCgG- -5'
21715 3' -55.9 NC_004812.1 + 15594 0.71 0.681988
Target:  5'- ---aCCgaUCGUCGUCgGUGUccGGGGCCc -3'
miRNA:   3'- cagaGG--AGCAGCAGaCACAa-CCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 52090 0.72 0.651661
Target:  5'- -gCUCCUCuUCGUCUGUGUcgccgagGGGGg- -3'
miRNA:   3'- caGAGGAGcAGCAGACACAa------CCCCgg -5'
21715 3' -55.9 NC_004812.1 + 80558 0.73 0.579714
Target:  5'- -cCUCCUCGUCGUC-GUccucuuccggaacGUUucGGGGCCc -3'
miRNA:   3'- caGAGGAGCAGCAGaCA-------------CAA--CCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 61273 0.73 0.560673
Target:  5'- -cCUCCUCGUCGgaucCUG-GaUGGGGCg -3'
miRNA:   3'- caGAGGAGCAGCa---GACaCaACCCCGg -5'
21715 3' -55.9 NC_004812.1 + 130621 0.75 0.455039
Target:  5'- uUCUCCgUCGUCGUCgucaucGGGGCCg -3'
miRNA:   3'- cAGAGG-AGCAGCAGacacaaCCCCGG- -5'
21715 3' -55.9 NC_004812.1 + 5112 0.75 0.455039
Target:  5'- uUCUCCgUCGUCGUCgucaucGGGGCCg -3'
miRNA:   3'- cAGAGG-AGCAGCAGacacaaCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.