miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 156373 0.67 0.999994
Target:  5'- gGGGGAGGAGAgCgGGGCcGCGGGGGc -3'
miRNA:   3'- -CCUUUCCUUUgGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 105430 0.67 0.999994
Target:  5'- gGGGAAGGAAcGCUCGGuGCG-CGGGGAGg -3'
miRNA:   3'- -CCUUUCCUU-UGGGUC-UGCuGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 11467 0.67 0.999994
Target:  5'- gGGAAAGGAAGaaaCGGaACGugGGAAu- -3'
miRNA:   3'- -CCUUUCCUUUgg-GUC-UGCugUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 26260 0.67 0.999992
Target:  5'- gGGAcucGGGGGAcgcggccgcgcggguGCCCcgcGGCGACAGGGGAa -3'
miRNA:   3'- -CCU---UUCCUU---------------UGGGu--CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 39947 0.67 0.999991
Target:  5'- ----cGGAAACCCgAGA-GACGGAGAGg -3'
miRNA:   3'- ccuuuCCUUUGGG-UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 128546 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 106568 0.67 0.999991
Target:  5'- aGGGAGGAGgcGCCCGGGCcgGGCGcAGAc -3'
miRNA:   3'- cCUUUCCUU--UGGGUCUG--CUGUuUUUu -5'
21715 5' -44.3 NC_004812.1 + 31501 0.67 0.999991
Target:  5'- uGGAGGGcgGCUCGGAUGGCGc---- -3'
miRNA:   3'- cCUUUCCuuUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 26684 0.67 0.999991
Target:  5'- uGGAGGGcGggGCUgcgUAGGCGGCGAcgGAu -3'
miRNA:   3'- -CCUUUC-CuuUGG---GUCUGCUGUUuuUU- -5'
21715 5' -44.3 NC_004812.1 + 64127 0.67 0.999996
Target:  5'- cGGggGGGAgGACgCGGACG-CGAu--- -3'
miRNA:   3'- -CCuuUCCU-UUGgGUCUGCuGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 126940 0.67 0.999996
Target:  5'- cGGGGAGG-GGCCgGGGCcGCGAGGGc -3'
miRNA:   3'- -CCUUUCCuUUGGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 155389 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 124343 0.67 0.999997
Target:  5'- gGGggGGGAcgccgcgGACCgGGAgGACGu---- -3'
miRNA:   3'- -CCuuUCCU-------UUGGgUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 86350 0.67 0.999996
Target:  5'- aGAGAGGAgaGAgCCGGGCGgugcgcgcuggguggGCGGAAGAg -3'
miRNA:   3'- cCUUUCCU--UUgGGUCUGC---------------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 98977 0.67 0.999994
Target:  5'- -----cGAGGCCCAGAUGACGu---- -3'
miRNA:   3'- ccuuucCUUUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 124488 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 113777 0.67 0.999997
Target:  5'- ----cGGcgccAAGCgCCAGACGACGGAGAu -3'
miRNA:   3'- ccuuuCC----UUUG-GGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 114006 0.67 0.999997
Target:  5'- cGGGAGGGAGuCCCGGGCcAUGGu--- -3'
miRNA:   3'- -CCUUUCCUUuGGGUCUGcUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 143666 0.67 0.999996
Target:  5'- cGGAAGaaucGGAGGCCCcGGCGAUc----- -3'
miRNA:   3'- -CCUUU----CCUUUGGGuCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 76463 0.67 0.999996
Target:  5'- aGGGcgacGAGGAAGgCCAGGgGGCAc---- -3'
miRNA:   3'- -CCU----UUCCUUUgGGUCUgCUGUuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.