miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 122418 0.67 0.999997
Target:  5'- cGGGu-GGAcgcgcggugGGCCCGGGCGGCGu---- -3'
miRNA:   3'- -CCUuuCCU---------UUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 156017 0.67 0.999997
Target:  5'- gGGAGGGGAcGCCCGGGgcCGGgGGc--- -3'
miRNA:   3'- -CCUUUCCUuUGGGUCU--GCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 124488 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 104312 0.67 0.999987
Target:  5'- cGGcgGGGAcggcGCCUccggGGGCGGCGAGGAGg -3'
miRNA:   3'- -CCuuUCCUu---UGGG----UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 125247 0.67 0.999987
Target:  5'- cGAucGAGGAGGCCCcGGcCGACGAc--- -3'
miRNA:   3'- cCU--UUCCUUUGGGuCU-GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 10128 0.67 0.999991
Target:  5'- gGGAAaagcaaagguggcAGGGAGCgaCAGACGGCGAn--- -3'
miRNA:   3'- -CCUU-------------UCCUUUGg-GUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 124343 0.67 0.999997
Target:  5'- gGGggGGGAcgccgcgGACCgGGAgGACGu---- -3'
miRNA:   3'- -CCuuUCCU-------UUGGgUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 86350 0.67 0.999996
Target:  5'- aGAGAGGAgaGAgCCGGGCGgugcgcgcuggguggGCGGAAGAg -3'
miRNA:   3'- cCUUUCCU--UUgGGUCUGC---------------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 131367 0.67 0.999996
Target:  5'- cGGGGAGGGuuCCCGGcccCGAgGAGGc- -3'
miRNA:   3'- -CCUUUCCUuuGGGUCu--GCUgUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 88710 0.67 0.999996
Target:  5'- cGGAGGGGgcACCCucGugGGCu----- -3'
miRNA:   3'- -CCUUUCCuuUGGGu-CugCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 21086 0.67 0.999996
Target:  5'- ----cGGcgGCCgAGGCGGCGAAGAc -3'
miRNA:   3'- ccuuuCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 1432 0.67 0.999996
Target:  5'- cGGGGAGG-GGCCgGGGCcGCGAGGGc -3'
miRNA:   3'- -CCUUUCCuUUGGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 113777 0.67 0.999997
Target:  5'- ----cGGcgccAAGCgCCAGACGACGGAGAu -3'
miRNA:   3'- ccuuuCC----UUUG-GGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 36291 0.67 0.999994
Target:  5'- cGGGAGGGggGucggggucuCCCAGggacGCGGCGGGc-- -3'
miRNA:   3'- -CCUUUCCuuU---------GGGUC----UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 19552 0.67 0.999991
Target:  5'- uGGAucGcGAAGCCCAGGcCGGCc----- -3'
miRNA:   3'- -CCUuuC-CUUUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 17607 0.67 0.999991
Target:  5'- gGGcGAGGcGGGCCCGGGCGAa------ -3'
miRNA:   3'- -CCuUUCC-UUUGGGUCUGCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 18388 0.68 0.999954
Target:  5'- cGGAGGGGAAACCCcucgAGcCGAUc----- -3'
miRNA:   3'- -CCUUUCCUUUGGG----UCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 103417 0.68 0.999954
Target:  5'- cGGcccAGAGGAucuCCCuGACGAgAAAGAGg -3'
miRNA:   3'- -CC---UUUCCUuu-GGGuCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 24908 0.68 0.999982
Target:  5'- gGGAAGGGAAggggguugauGCUaaugagAGACGACAGGGGc -3'
miRNA:   3'- -CCUUUCCUU----------UGGg-----UCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 152843 0.68 0.999982
Target:  5'- -cGGGGGGGACUUGGGCGGCGGGc-- -3'
miRNA:   3'- ccUUUCCUUUGGGUCUGCUGUUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.