Results 101 - 120 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 25935 | 0.68 | 0.999954 |
Target: 5'- cGGAgucgGAGGAccgGGCCCGGACcGCGGGc-- -3' miRNA: 3'- -CCU----UUCCU---UUGGGUCUGcUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 145288 | 0.68 | 0.999965 |
Target: 5'- cGGggGGGugugcgguguggcGGGCCCGGugGGCcGAu-- -3' miRNA: 3'- -CCuuUCC-------------UUUGGGUCugCUGuUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 138529 | 0.68 | 0.999954 |
Target: 5'- ----cGGcgGCCCGGACGGCGGc--- -3' miRNA: 3'- ccuuuCCuuUGGGUCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 103417 | 0.68 | 0.999954 |
Target: 5'- cGGcccAGAGGAucuCCCuGACGAgAAAGAGg -3' miRNA: 3'- -CC---UUUCCUuu-GGGuCUGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 12288 | 0.68 | 0.999975 |
Target: 5'- cGGggGGGcggagcgAAACCCAcGACGGCc----- -3' miRNA: 3'- -CCuuUCC-------UUUGGGU-CUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 9670 | 0.68 | 0.999976 |
Target: 5'- gGGAGGGGGAcgGCCCGGAacgcgucacguuCGACu----- -3' miRNA: 3'- -CCUUUCCUU--UGGGUCU------------GCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 98516 | 0.68 | 0.999982 |
Target: 5'- cGGGucccGGGcgGCCCcGGCGACGAGc-- -3' miRNA: 3'- -CCUu---UCCuuUGGGuCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 60152 | 0.68 | 0.999982 |
Target: 5'- aGGAGGGG----CCAGGCGGCGAu--- -3' miRNA: 3'- -CCUUUCCuuugGGUCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 121942 | 0.68 | 0.999982 |
Target: 5'- -cGGGGGGGACUUGGGCGGCGGGc-- -3' miRNA: 3'- ccUUUCCUUUGGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 150416 | 0.68 | 0.999982 |
Target: 5'- gGGAAGGGAAggggguugauGCUaaugagAGACGACAGGGGc -3' miRNA: 3'- -CCUUUCCUU----------UGGg-----UCUGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 141470 | 0.68 | 0.999976 |
Target: 5'- ---cGGGGAGCCCccgAGGCGACGc---- -3' miRNA: 3'- ccuuUCCUUUGGG---UCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 93533 | 0.68 | 0.999975 |
Target: 5'- aGGAgcggccgGAGGggGCCguGGgGGCGGAGc- -3' miRNA: 3'- -CCU-------UUCCuuUGGguCUgCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 78675 | 0.68 | 0.999954 |
Target: 5'- gGGGucGGGggUUCGGACGACGc---- -3' miRNA: 3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 18388 | 0.68 | 0.999954 |
Target: 5'- cGGAGGGGAAACCCcucgAGcCGAUc----- -3' miRNA: 3'- -CCUUUCCUUUGGG----UCuGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 7595 | 0.68 | 0.999976 |
Target: 5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3' miRNA: 3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 152843 | 0.68 | 0.999982 |
Target: 5'- -cGGGGGGGACUUGGGCGGCGGGc-- -3' miRNA: 3'- ccUUUCCUUUGGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 24908 | 0.68 | 0.999982 |
Target: 5'- gGGAAGGGAAggggguugauGCUaaugagAGACGACAGGGGc -3' miRNA: 3'- -CCUUUCCUU----------UGGg-----UCUGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 68449 | 0.68 | 0.999982 |
Target: 5'- cGAAGGGGcuCCCGGugGugGc---- -3' miRNA: 3'- cCUUUCCUuuGGGUCugCugUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 10727 | 0.68 | 0.999982 |
Target: 5'- gGGGAGGGgcGgCgGGGCGGCAAc--- -3' miRNA: 3'- -CCUUUCCuuUgGgUCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 147807 | 0.68 | 0.999976 |
Target: 5'- cGAGAGu-AGCCCGGGCGGgAGGGGGa -3' miRNA: 3'- cCUUUCcuUUGGGUCUGCUgUUUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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