miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 144623 0.71 0.999219
Target:  5'- cGGAGcccgccGGcGGAACCCcgcccccgcgGGACGACGAGGAGg -3'
miRNA:   3'- -CCUU------UC-CUUUGGG----------UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 142040 0.71 0.999033
Target:  5'- aGGAcGAGGAcgagcaGGcCCCGGGCGACGAGc-- -3'
miRNA:   3'- -CCU-UUCCU------UU-GGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 105637 0.71 0.999033
Target:  5'- gGGAAGGGAGGCCgCGGAggcUGGCGu---- -3'
miRNA:   3'- -CCUUUCCUUUGG-GUCU---GCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 129649 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 19762 0.71 0.999033
Target:  5'- cGGugcGGGGGuCCCAGGCGACGc---- -3'
miRNA:   3'- -CCuu-UCCUUuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 5054 0.71 0.999033
Target:  5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3'
miRNA:   3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 216 0.71 0.999374
Target:  5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3'
miRNA:   3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 82029 0.71 0.99881
Target:  5'- cGGggGGGAcGCCguCGGGCGcCGGAAAGc -3'
miRNA:   3'- -CCuuUCCUuUGG--GUCUGCuGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 35955 0.71 0.999033
Target:  5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3'
miRNA:   3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 124645 0.71 0.999033
Target:  5'- cGGggGGcGAGAUCCuGGGCGACGu---- -3'
miRNA:   3'- -CCuuUC-CUUUGGG-UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 96863 0.71 0.99881
Target:  5'- gGGGAccccGGGAcccggccggAACCCAGACGACc----- -3'
miRNA:   3'- -CCUU----UCCU---------UUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 31117 0.71 0.999374
Target:  5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3'
miRNA:   3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 35573 0.7 0.99969
Target:  5'- aGGGAGGGGGcggcgggggcACCC-GACGGCGAc--- -3'
miRNA:   3'- -CCUUUCCUU----------UGGGuCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 146659 0.7 0.999605
Target:  5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3'
miRNA:   3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 76894 0.7 0.999605
Target:  5'- cGGAGGGugGCCaGGACGGCGGGGGc -3'
miRNA:   3'- cCUUUCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 30766 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 98896 0.7 0.999501
Target:  5'- cGGAAAGaGggGCgCGGuggcGCGGCAGAAGc -3'
miRNA:   3'- -CCUUUC-CuuUGgGUC----UGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 89514 0.7 0.999501
Target:  5'- uGGAGAGcGAGCUgguguuugCGGGCGACGAGGAGg -3'
miRNA:   3'- -CCUUUCcUUUGG--------GUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156274 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 62147 0.7 0.999501
Target:  5'- cGGcGAGGgcGCCCAGggaaACGAgGAAGAGc -3'
miRNA:   3'- -CCuUUCCuuUGGGUC----UGCUgUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.