miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 146659 0.7 0.999605
Target:  5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3'
miRNA:   3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 89514 0.7 0.999501
Target:  5'- uGGAGAGcGAGCUgguguuugCGGGCGACGAGGAGg -3'
miRNA:   3'- -CCUUUCcUUUGG--------GUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 108625 0.7 0.999666
Target:  5'- cGAAGGGGuaguacggguccauGGCCCGuccGGCGGCAGGGAGg -3'
miRNA:   3'- cCUUUCCU--------------UUGGGU---CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 118640 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 108547 0.69 0.999813
Target:  5'- cGggGGGAAACUCGGGgGugAuGAAGg -3'
miRNA:   3'- cCuuUCCUUUGGGUCUgCugUuUUUU- -5'
21715 5' -44.3 NC_004812.1 + 96345 0.69 0.999813
Target:  5'- cGGAAAGGcgGCCCAGGgGGg------ -3'
miRNA:   3'- -CCUUUCCuuUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 57352 0.69 0.999813
Target:  5'- gGGAGAGGAAGCagGGAaaGACGAGAc- -3'
miRNA:   3'- -CCUUUCCUUUGggUCUg-CUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 105233 0.69 0.999813
Target:  5'- -cGAAGGAcACCCGGGCgGGCGAc--- -3'
miRNA:   3'- ccUUUCCUuUGGGUCUG-CUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 151056 0.69 0.999813
Target:  5'- cGGAccccGAGG-AGCCCGacGACGACGAc--- -3'
miRNA:   3'- -CCU----UUCCuUUGGGU--CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 5285 0.69 0.999856
Target:  5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3'
miRNA:   3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 114947 0.69 0.999856
Target:  5'- gGGAAAGuGGACgCGG-CGGCAAGAAAg -3'
miRNA:   3'- -CCUUUCcUUUGgGUCuGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 139694 0.69 0.999891
Target:  5'- -aGGAGGggGCCgGaGACGGCGAGc-- -3'
miRNA:   3'- ccUUUCCuuUGGgU-CUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 92236 0.69 0.999938
Target:  5'- gGGAGAGGGuguGGCCUGGcGgGGCGGAGGAg -3'
miRNA:   3'- -CCUUUCCU---UUGGGUC-UgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 2463 0.69 0.999938
Target:  5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3'
miRNA:   3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 68342 0.69 0.999936
Target:  5'- aGAGccAGGAGGCCCgggucgaAGGCGACAu---- -3'
miRNA:   3'- cCUU--UCCUUUGGG-------UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 125174 0.69 0.999856
Target:  5'- gGGAGgcGGGAgGGCCCGGGCGcGCGGGc-- -3'
miRNA:   3'- -CCUU--UCCU-UUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 23895 0.69 0.999918
Target:  5'- gGGAGucGGAcgucGGCCgGGACGACGAc--- -3'
miRNA:   3'- -CCUUu-CCU----UUGGgUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 103851 0.69 0.999918
Target:  5'- cGGGGuuggcGGGAAGCCCGGAaaACAGGu-- -3'
miRNA:   3'- -CCUU-----UCCUUUGGGUCUgcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 25548 0.69 0.999813
Target:  5'- cGGAccccGAGG-AGCCCGacGACGACGAc--- -3'
miRNA:   3'- -CCU----UUCCuUUGGGU--CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 156200 0.69 0.999891
Target:  5'- gGGGGAGGggGCCgCuggggagagGGACGGgGGGGAGa -3'
miRNA:   3'- -CCUUUCCuuUGG-G---------UCUGCUgUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.